2,872 results on '"A. F. Vale"'
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2. United States Tax court's order in the case of Travis F. Vale & Catherine E. Vale, Petitioners v COMMISSIONER OF INTERNAL REVENUE, Respondent ( Docket No. 13040-23)
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United States. Tax Court ,News, opinion and commentary - Abstract
Washington: United States Tax Court has issued the following order: Received 10/04/23 05:11 pm Filed 10/04/23 Travis F. Vale & Catherine E. Vale, Petitioners v. Commissioner of Internal Revenue Respondent [...]
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- 2023
3. Gene content, phage cycle regulation model and prophage inactivation disclosed by prophage genomics in the Helicobacter pylori Genome Project
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Filipa F. Vale, Richard J. Roberts, Ichizo Kobayashi, M. Constanza Camargo, and Charles S. Rabkin
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HpGP ,H. pylori ,prophage ,mobile elements ,genome rearrangement ,phage cycle ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Prophages can have major clinical implications through their ability to change pathogenic bacterial traits. There is limited understanding of the prophage role in ecological, evolutionary, adaptive processes and pathogenicity of Helicobacter pylori, a widespread bacterium causally associated with gastric cancer. Inferring the exact prophage genomic location and completeness requires complete genomes. The international Helicobacter pylori Genome Project (HpGP) dataset comprises 1011 H. pylori complete clinical genomes enriched with epigenetic data. We thoroughly evaluated the H. pylori prophage genomic content in the HpGP dataset. We investigated population evolutionary dynamics through phylogenetic and pangenome analyses. Additionally, we identified genome rearrangements and assessed the impact of prophage presence on bacterial gene disruption and methylome. We found that 29.5% (298) of the HpGP genomes contain prophages, of which only 32.2% (96) were complete, minimizing the burden of prophage carriage. The prevalence of H. pylori prophage sequences was variable by geography and ancestry, but not by disease status of the human host. Prophage insertion occasionally results in gene disruption that can change the global bacterial epigenome. Gene function prediction allowed the development of the first model for lysogenic-lytic cycle regulation in H. pylori. We have disclosed new prophage inactivation mechanisms that appear to occur by genome rearrangement, merger with other mobile elements, and pseudogene accumulation. Our analysis provides a comprehensive framework for H. pylori prophage biological and genomics, offering insights into lysogeny regulation and bacterial adaptation to prophages.
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- 2024
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4. Genetic Variation in Trophic Avoidance Behaviour Shows Fruit Flies are Generally Attracted to Bacterial Substrates
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Katy M. Monteith, Phoebe Thornhill, and Pedro F. Vale
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bacterial infection ,feeding ,genetic variation ,GWAS ,immune deficiency pathway ,pathogen avoidance ,Ecology ,QH540-549.5 - Abstract
ABSTRACT Pathogen avoidance behaviours are often assumed to be an adaptive host defence. However, there is limited experimental data on heritable, intrapopulation phenotypic variation for avoidance, a strong prerequisite for adaptive responses to selection. We investigated trophic pathogen avoidance in 122 inbred Drosophila melanogaster lines, and in a derived outbred population. Using the FlyPAD system, we tracked the feeding choice that flies made between substrates that were either clean or contained a bacterial pathogen. We uncovered significant, but weakly heritable variation in the preference index amongst fly lines. However, instead of avoidance, most lines demonstrated a preference for substrates containing several bacterial pathogens, showing avoidance only for extremely high bacterial concentrations. Bacterial preference was not associated with susceptibility to infection and was retained in flies with disrupted immune signalling. Phenotype–genotype association analysis indicated several novel genes (CG2321, CG2006, and ptp99A) associated with increased preference for the bacterial substrate, while the amino‐acid transporter sobremesa was associated with greater aversion. Given the known fitness benefits of consuming high‐protein diets, our results suggest that bacterial attraction may instead reflect a dietary preference for protein over carbohydrate. More work quantifying intrapopulation variation in avoidance behaviours is needed to fully assess its importance in host–pathogen evolutionary ecology.
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- 2024
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5. Mitochondrial perturbation in immune cells enhances cell-mediated innate immunity in Drosophila
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Laura Vesala, Yuliya Basikhina, Tea Tuomela, Anssi Nurminen, Emilia Siukola, Pedro F. Vale, and Tiina S. Salminen
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Aerobic glycolysis ,Hemocyte ,Infection ,Lamellocyte ,Leptopilina boulardi ,Mitochondrial membrane potential ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background Mitochondria participate in various cellular processes including energy metabolism, apoptosis, autophagy, production of reactive oxygen species, stress responses, inflammation and immunity. However, the role of mitochondrial metabolism in immune cells and tissues shaping the innate immune responses are not yet fully understood. We investigated the effects of tissue-specific mitochondrial perturbation on the immune responses at the organismal level. Genes for oxidative phosphorylation (OXPHOS) complexes cI-cV were knocked down in the fruit fly Drosophila melanogaster, targeting the two main immune tissues, the fat body and the immune cells (hemocytes). Results While OXPHOS perturbation in the fat body was detrimental, hemocyte-specific perturbation led to an enhanced immunocompetence. This was accompanied by the formation of melanized hemocyte aggregates (melanotic nodules), a sign of activation of cell-mediated innate immunity. Furthermore, the hemocyte-specific OXPHOS perturbation induced immune activation of hemocytes, resulting in an infection-like hemocyte profile and an enhanced immune response against parasitoid wasp infection. In addition, OXPHOS perturbation in hemocytes resulted in mitochondrial membrane depolarization and upregulation of genes associated with the mitochondrial unfolded protein response. Conclusions Overall, we show that while the effects of mitochondrial perturbation on immune responses are highly tissue-specific, mild mitochondrial dysfunction can be beneficial in immune-challenged individuals and contributes to variation in infection outcomes among individuals.
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- 2024
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6. IMD-mediated innate immune priming increases Drosophila survival and reduces pathogen transmission.
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Arun Prakash, Florence Fenner, Biswajit Shit, Tiina S Salminen, Katy M Monteith, Imroze Khan, and Pedro F Vale
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Invertebrates lack the immune machinery underlying vertebrate-like acquired immunity. However, in many insects past infection by the same pathogen can 'prime' the immune response, resulting in improved survival upon reinfection. Here, we investigated the mechanistic basis and epidemiological consequences of innate immune priming in the fruit fly Drosophila melanogaster when infected with the gram-negative bacterial pathogen Providencia rettgeri. We find that priming in response to P. rettgeri infection is a long-lasting and sexually dimorphic response. We further explore the epidemiological consequences of immune priming and find it has the potential to curtail pathogen transmission by reducing pathogen shedding and spread. The enhanced survival of individuals previously exposed to a non-lethal bacterial inoculum coincided with a transient decrease in bacterial loads, and we provide strong evidence that the effect of priming requires the IMD-responsive antimicrobial-peptide Diptericin-B in the fat body. Further, we show that while Diptericin B is the main effector of bacterial clearance, it is not sufficient for immune priming, which requires regulation of IMD by peptidoglycan recognition proteins. This work underscores the plasticity and complexity of invertebrate responses to infection, providing novel experimental evidence for the effects of innate immune priming on population-level epidemiological outcomes.
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- 2024
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7. ESPECTROSCOPIA DE FLUORESCÊNCIA: DOS FUNDAMENTOS À INFLUÊNCIA DOS PARÂMETROS INSTRUMENTAIS PARA ANÁLISES DE CORANTES ORGÂNICOS E NANOPARTÍCULAS INORGÂNICAS
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Rafael S. Mourão, Brener R. Carvalho Vale, André F. Vale Fonseca, Thaís A. S. Carvalho, and Marco A. Schiavon
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Chemistry ,QD1-999 - Abstract
Fluorescence spectroscopy is an extremely sensitive analytical technique that has been widely used to elucidate problems that require low detection limits. Although fluorescence spectroscopy is widespread in industry and academia, there is a lack of teaching materials demonstrating its basic principles, as well as the influence of instrumental parameters involved in the technique, which limit its correct use and the full potential of it. For this reason, this work aims to explore the principles of fluorescence spectroscopy and correlate them in function of different instrumental variables to carry out a fluorescence experiment. The spectrofluorometer parameters such as the excitation wavelength, excitation and emission slits, step, integration time, detection geometry as well as concentration of the samples were varied to illustrate how the best resulting spectra can be registered free of artifacts. To do so, two organic dyes with structured vibronic bands (pyrene) and another with unstructured bands (rhodamine 6G) were used. Another study carried out involved the use of 3D spectra, excitation/emission spectra, of cadmium telluride (CdTe) quantum dots. In this case, it was possible to show the excitation spectrum of nanomaterials, collecting emissions at different wavelengths, as well as analyzing the particle size distribution.
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- 2024
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8. Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations
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Harry A. Thorpe, Elise Tourrette, Koji Yahara, Filipa F. Vale, Siqi Liu, Mónica Oleastro, Teresa Alarcon, Tsachi-Tsadok Perets, Saeid Latifi-Navid, Yoshio Yamaoka, Beatriz Martinez-Gonzalez, Ioannis Karayiannis, Timokratis Karamitros, Dionyssios N. Sgouras, Wael Elamin, Ben Pascoe, Samuel K. Sheppard, Jukka Ronkainen, Pertti Aro, Lars Engstrand, Lars Agreus, Sebastian Suerbaum, Kaisa Thorell, and Daniel Falush
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Science - Abstract
Helicobacter pylori is a major human pathogen whose population structure is similar to that of its host. Here, the authors show that H. pylori has repeatedly spread out of Africa recently, replacing deleterious variants that accumulated during the original out of Africa migrations more than 50,000 years ago.
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- 2022
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9. Intraspecific genetic variation in host vigour, viral load and disease tolerance during Drosophila C virus infection
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Megan A. M. Kutzer, Vanika Gupta, Kyriaki Neophytou, Vincent Doublet, Katy M. Monteith, and Pedro F. Vale
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tolerance ,resistance ,Drosophila C virus ,viral infection ,Biology (General) ,QH301-705.5 - Abstract
Genetic variation for resistance and disease tolerance has been described in a range of species. In Drosophila melanogaster, genetic variation in mortality following systemic Drosophila C virus (DCV) infection is driven by large-effect polymorphisms in the restriction factor pastrel (pst). However, it is unclear if pst contributes to disease tolerance. We investigated systemic DCV challenges spanning nine orders of magnitude, in males and females of 10 Drosophila Genetic Reference Panel lines carrying either a susceptible (S) or resistant (R) pst allele. We find among-line variation in fly survival, viral load and disease tolerance measured both as the ability to maintain survival (mortality tolerance) and reproduction (fecundity tolerance). We further uncover novel effects of pst on host vigour, as flies carrying the R allele exhibited higher survival and fecundity even in the absence of infection. Finally, we found significant genetic variation in the expression of the JAK-STAT ligand upd3 and the epigenetic regulator of JAK-STAT G9a. However, while G9a has been previously shown to mediate tolerance of DCV infection, we found no correlation between the expression of either upd3 or G9a on fly tolerance or resistance. Our work highlights the importance of both resistance and tolerance in viral defence.
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- 2023
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10. An Assessment of Sentence Simplification Methods in Extractive Text Summarization.
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Rafaella F. Vale, Rafael Dueire Lins, and Rafael Ferreira 0002
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- 2020
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11. Assessing the Prospects for Fair Housing.
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Infranca, John
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Furthering Fair Housing: Prospects for Racial Justice in America's Neighborhoods (Nonfiction work) -- Steil, Justin P. -- Kelly, Nicholas F. -- Vale, Lawrence J. -- Woluchem, Maia S. ,Books -- Book reviews - Abstract
Furthering Fair Housing: Prospects for Racial Justice in America's Neighborhoods Justin P. Steil, Nicholas F. Kelly, Lawrence J. Vale & Maia S. Woluchem, eds. Temple University Press (2021) 246 pages, [...]
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- 2022
12. Pituitary tumor resection in a patient with SARS-CoV-2 (COVID-19) infection. A case report and suggested airway management guidelines
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Christiano dos Santos e Santos, Luiz M. da Costa Lima Filho, Cristiane A. Tuma Santos, James S. Neill, Henrique F. Vale, and Lakshmi N. Kurnutala
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Pituitary tumor ,Airway management ,SARS-CoV-2 infection (COVID-19) ,Anesthesiology ,RD78.3-87.3 - Abstract
Abstract The 2020 pandemic caused by the novel coronavirus, COVID-19, had its headquarters in China. It causes Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and presents a broad spectrum of clinical manifestations, ranging from entirely asymptomatic through severe acute respiratory failure and death. Presuming a significant quantity of ventilator-dependent patients, several institutions strategically delayed elective surgeries. Particularly procedures performed involving the nasal mucosa, such as a transsphenoidal approach of the pituitary gland, considering the tremendous level of viral shedding. Nevertheless, critical cases demand expeditious resolution. Those situations are severe pituitary apoplexy, declining consciousness level, or risk of acute visual loss. This case presents a successful urgent perioperative management of a 47 year-old male COVID-19 positive patient who presented to the Emergency Department with a left frontal headache that culminated with diplopia, left eye ptosis, and left visual acuity loss after 5 days. Transsphenoidal hypophysectomy was uneventfully performed, and the patient was discharged from the hospital on postoperative day four. It additionally describes in detail the University of Mississippi Medical Center airway management algorithm for patients infected with the novel coronavirus who need emergent surgical attention.
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- 2020
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13. Editorial: The Role of Mobile Genetic Elements in Bacterial Evolution and Their Adaptability
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Filipa F. Vale, Philippe Lehours, and Yoshio Yamaoka
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mobile elements (MEs) ,evolution ,adaptability ,bacteriophage ,virulence factors ,insertion sequence (Is) ,Microbiology ,QR1-502 - Published
- 2022
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14. Author Correction: Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations
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Harry A. Thorpe, Elise Tourrette, Koji Yahara, Filipa F. Vale, Siqi Liu, Mónica Oleastro, Teresa Alarcon, Tsachi-Tsadok Perets, Saeid Latifi-Navid, Yoshio Yamaoka, Beatriz Martinez-Gonzalez, Ioannis Karayiannis, Timokratis Karamitros, Dionyssios N. Sgouras, Wael Elamin, Ben Pascoe, Samuel K. Sheppard, Jukka Ronkainen, Pertti Aro, Lars Engstrand, Lars Agreus, Sebastian Suerbaum, Kaisa Thorell, and Daniel Falush
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Science - Published
- 2023
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15. Market Maker Surveillance Report. GE, T, CSCO, F, VALE, DLIA, Highest Net Sell Volume and Negative Price Friction For Wednesday, December 10th 2014
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AT&T Inc. ,Vale S.A. ,General Electric Co. ,Mineral industry ,Telecommunications services industry ,Mining industry ,Electrical equipment and supplies industry ,Communications industry ,Telecommunications services industry ,Business ,Business, international - Abstract
M2 PRESSWIRE-December 11, 2014-BUYINS.NET: Market Maker Surveillance Report. GE, T, CSCO, F, VALE, DLIA, Highest Net Sell Volume and Negative Price Friction For Wednesday, December 10th 2014 (C)1994-2014 M2 COMMUNICATIONS [...]
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- 2014
16. Deep Learning for People Detection on Beach Images.
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Sérgio F. Chevtchenko, Rafaella F. Vale, Filipe R. Cordeiro, and Valmir Macario
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- 2018
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17. Assessing Sentence Simplification Methods Applied to Text Summarization.
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Rafaella F. Vale, Rafael Dueire Lins, and Rafael Ferreira 0002
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- 2018
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18. Discutindo a Lei 13.146 – Lei Brasileira de Inclusão
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Vale e Sarmento, Nathalia do, primary and Monteiro, Francisca Keyle de F. Vale, additional
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- 2021
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19. Market Maker Surveillance Report. GE, T, CSCO, F, VALE, DLIA, Highest Net Sell Volume and Negative Price Friction For Wednesday, December 10th 2014
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AT&T Inc. ,Vale S.A. ,AT&T Corp. ,General Electric Co. ,Ford Motor Co. ,Mineral industry ,Telecommunications services industry ,Mining industry ,Electrical equipment and supplies industry ,Communications industry ,Telecommunications services industry ,General interest ,News, opinion and commentary - Abstract
Dec 11, 2014 (M2 PRESSWIRE via COMTEX) -- BUYINS.NET / www.buyins.net, announced today its proprietary Market Maker Friction Factor Report for Wednesday. Since October 2008 market makers are now required [...]
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- 2014
20. NYSE active Stocks: Petroleo Brasileiro Petrobras SA (NYSE:PBR), Ford Motor Company (NYSE:F), Vale SA (NYSE:VALE), Bank of America Corp (NYSE:BAC), Pfizer (NYSE:PFE)
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Pfizer Inc. ,Vale S.A. ,Bank of America Corp. ,Banks (Finance) ,Banking industry ,Mineral industry ,Petroleum services industry ,Mining industry ,Pharmaceutical industry ,Banking industry ,Banking, finance and accounting industries - Abstract
Brazil's Finance Minister Guido Mantega turned down Petroleo Brasileiro Petrobras SA (ADR) (NYSE:PBR)'s most recent requests for fuel-price increases and told management that delivering on production targets would ease its [...]
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- 2014
21. Glutaredoxin: Discovery, redox defense and much more
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Fernando T. Ogata, Vasco Branco, Filipa F. Vale, and Lucia Coppo
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Glutaredoxin ,Redox regulation ,Glutathionylation ,Deglutathionylation ,Iron homeostasis ,Grxs phylogenetics ,Medicine (General) ,R5-920 ,Biology (General) ,QH301-705.5 - Abstract
Glutaredoxin, Grx, is a small protein containing an active site cysteine pair and was discovered in 1976 by Arne Holmgren. The Grx system, comprised of Grx, glutathione, glutathione reductase, and NADPH, was first described as an electron donor for Ribonucleotide Reductase but, from the first discovery in E.coli, the Grx family has impressively grown, particularly in the last two decades. Several isoforms have been described in different organisms (from bacteria to humans) and with different functions.The unique characteristic of Grxs is their ability to catalyse glutathione-dependent redox regulation via glutathionylation, the conjugation of glutathione to a substrate, and its reverse reaction, deglutathionylation. Grxs have also recently been enrolled in iron sulphur cluster formation. These functions have been implied in various physiological and pathological conditions, from immune defense to neurodegeneration and cancer development thus making Grx a possible drug target.This review aims to give an overview on Grxs, starting by a phylogenetic analysis of vertebrate Grxs, followed by an analysis of the mechanisms of action, the specific characteristics of the different human isoforms and a discussion on aspects related to human physiology and diseases.
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- 2021
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22. Market Maker Surveillance Report. KO, FLEX, WFC, ALTR, F, VALE, Bearishly Biased Price Friction For Friday, January 25th 2013
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Altera Corp. ,Vale S.A. ,Wells Fargo & Co. ,Coca-Cola Co. (Atlanta, Georgia) ,Ford Motor Co. ,Transportation equipment industry ,Soft drink industry ,Semiconductor industry ,Banking industry ,Mineral industry ,Mining industry ,Semiconductor industry ,Banking industry ,Business ,Business, international - Abstract
M2 PRESSWIRE-January 28, 2013-BUYINS.NET: Market Maker Surveillance Report. KO, FLEX, WFC, ALTR, F, VALE, Bearishly Biased Price Friction For Friday, January 25th 2013(C)1994-2013 M2 COMMUNICATIONS RDATE:26012013 BUYINS.NET / www.buyins.net, announced [...]
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- 2013
23. Market Maker Surveillance Report. CMCSA, QCOM, MU, HPQ, F, VALE, Bullishly Biased Price Friction For Tuesday, June 5th 2012
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Vale S.A. ,Hewlett-Packard Co. ,Ford Motor Co. ,QUALCOMM Inc. QUALCOMM CDMA Technologies ,Transportation equipment industry ,Mineral industry ,Mining industry ,Computer industry ,Microcomputer industry ,Computer industry ,Business ,Business, international - Abstract
M2 PRESSWIRE-June 6, 2012-BUYINS.NET: Market Maker Surveillance Report. CMCSA, QCOM, MU, HPQ, F, VALE, Bullishly Biased Price Friction For Tuesday, June 5th 2012(C)1994-2012 M2 COMMUNICATIONS RDATE:06062012 BUYINS.NET / www.buyins.net, announced [...]
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- 2012
24. Market Maker Surveillance Report. KO, FLEX, WFC, ALTR, F, VALE, Bearishly Biased Price Friction For Friday, January 25th 2013
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Altera Corp. ,Vale S.A. ,Wells Fargo & Co. ,Coca-Cola Co. (Atlanta, Georgia) ,Ford Motor Co. ,Transportation equipment industry ,Soft drink industry ,Semiconductor industry ,Banking industry ,Mineral industry ,Mining industry ,Semiconductor industry ,Banking industry ,General interest ,News, opinion and commentary - Abstract
Jan 28, 2013 (M2 PRESSWIRE via COMTEX) -- BUYINS.NET / www.buyins.net, announced today its proprietary Market Maker Friction Factor Report for Friday. Since October 2008 market makers are now required [...]
- Published
- 2013
25. Dissecting genetic and sex-specific sources of host heterogeneity in pathogen shedding and spread.
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Jonathon A Siva-Jothy and Pedro F Vale
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Host heterogeneity in disease transmission is widespread but precisely how different host traits drive this heterogeneity remains poorly understood. Part of the difficulty in linking individual variation to population-scale outcomes is that individual hosts can differ on multiple behavioral, physiological and immunological axes, which will together impact their transmission potential. Moreover, we lack well-characterized, empirical systems that enable the quantification of individual variation in key host traits, while also characterizing genetic or sex-based sources of such variation. Here we used Drosophila melanogaster and Drosophila C Virus as a host-pathogen model system to dissect the genetic and sex-specific sources of variation in multiple host traits that are central to pathogen transmission. Our findings show complex interactions between genetic background, sex, and female mating status accounting for a substantial proportion of variance in lifespan following infection, viral load, virus shedding, and viral load at death. Two notable findings include the interaction between genetic background and sex accounting for nearly 20% of the variance in viral load, and genetic background alone accounting for ~10% of the variance in viral shedding and in lifespan following infection. To understand how variation in these traits could generate heterogeneity in individual pathogen transmission potential, we combined measures of lifespan following infection, virus shedding, and previously published data on fly social aggregation. We found that the interaction between genetic background and sex explained ~12% of the variance in individual transmission potential. Our results highlight the importance of characterising the sources of variation in multiple host traits to understand the drivers of heterogeneity in disease transmission.
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- 2021
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26. Biomarker Characterization and Prediction of Virulence and Antibiotic Resistance from Helicobacter pylori Next Generation Sequencing Data
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Joana S. Vital, Luís Tanoeiro, Ricardo Lopes-Oliveira, and Filipa F. Vale
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H. pylori ,biomarkers ,NGS ,WGS ,virulence ,antibiotic resistance ,Microbiology ,QR1-502 - Abstract
The Gram-negative bacterium Helicobacter pylori colonizes c.a. 50% of human stomachs worldwide and is the major risk factor for gastric adenocarcinoma. Its high genetic variability makes it difficult to identify biomarkers of early stages of infection that can reliably predict its outcome. Moreover, the increasing antibiotic resistance found in H. pylori defies therapy, constituting a major human health problem. Here, we review H. pylori virulence factors and genes involved in antibiotic resistance, as well as the technologies currently used for their detection. Furthermore, we show that next generation sequencing may lead to faster characterization of virulence factors and prediction of the antibiotic resistance profile, thus contributing to personalized treatment and management of H. pylori-associated infections. With this new approach, more and permanent data will be generated at a lower cost, opening the future to new applications for H. pylori biomarker identification and antibiotic resistance prediction.
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- 2022
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27. BUYINS.NET: Market Maker Surveillance Report. CMCSA, QCOM, MU, HPQ, F, VALE, Bullishly Biased Price Friction For Tuesday, June 5th 2012
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Vale S.A. ,Hewlett-Packard Co. ,Ford Motor Co. ,Micron Technology Inc. ,QUALCOMM Inc. QUALCOMM CDMA Technologies ,Transportation equipment industry ,Mineral industry ,Mining industry ,Computer industry ,Microcomputer industry ,Computer industry ,General interest ,News, opinion and commentary - Abstract
Jun 06, 2012 (M2 PRESSWIRE via COMTEX) -- BUYINS.NET / www.buyins.net, announced today its proprietary Market Maker Friction Factor Report for Tuesday. Since October 2008 market makers are now required [...]
- Published
- 2012
28. Multi-objective optimization for hand posture recognition.
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Sérgio F. Chevtchenko, Rafaella F. Vale, and Valmir Macario
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- 2018
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29. A convolutional neural network with feature fusion for real-time hand posture recognition.
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Sérgio F. Chevtchenko, Rafaella F. Vale, Valmir Macario, and Filipe R. Cordeiro
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- 2018
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30. Ageing leads to reduced specificity of antimicrobial peptide responses in
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Biswajit, Shit, Arun, Prakash, Saubhik, Sarkar, Pedro F, Vale, and Imroze, Khan
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Male ,Aging ,Drosophila melanogaster ,Animals ,Drosophila Proteins ,Female ,Antimicrobial Peptides ,Adenosine Monophosphate ,Immunity, Innate ,Antimicrobial Cationic Peptides - Abstract
Evolutionary theory predicts a late-life decline in the force of natural selection, possibly leading to late-life deregulations of the immune system. A potential outcome of such deregulations is the inability to produce specific immunity against target pathogens. We tested this possibility by infecting multiple
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- 2023
31. Bacteriophages of Helicobacter pylori
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Angela B. Muñoz, Johanna Stepanian, Alba Alicia Trespalacios, and Filipa F. Vale
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Helicobacter pylori ,bacteriophage ,phage therapy ,prophage genetic diversity ,phage–host interaction ,Microbiology ,QR1-502 - Abstract
The bacterium Helicobacter pylori colonize the stomach in approximately half of the world’s population. Infection with this bacterium is associated with gastritis, peptic ulcer, adenocarcinoma, and gastric mucosa-associated lymphoid tissue lymphoma. Besides being a pathogen with worldwide prevalence, H. pylori show increasingly high antibiotic resistance rates, making the development of new therapeutic strategies against this bacterium challenging. Furthermore, H. pylori is a genetically diverse bacterium, which may be influenced by the presence of mobile genomic elements, including prophages. In this review, we analyze these issues and summarize various reports and findings related to phages and H. pylori, discussing the relationship between the presence of these elements and the genomic diversity, virulence, and fitness of this bacterium. We also analyze the state of the knowledge on the potential utility of bacteriophages as a therapeutic strategy for H. pylori.
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- 2020
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32. Drosophila as a Model System to Investigate the Effects of Mitochondrial Variation on Innate Immunity
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Tiina S. Salminen and Pedro F. Vale
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Drosophila melanogaster ,cybrid ,infection ,innate immunity ,mitochondria ,mtDNA ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Understanding why the response to infection varies between individuals remains one of the major challenges in immunology and infection biology. A substantial proportion of this heterogeneity can be explained by individual genetic differences which result in variable immune responses, and there are many examples of polymorphisms in nuclear-encoded genes that alter immunocompetence. However, how immunity is affected by genetic polymorphism in an additional genome, inherited maternally inside mitochondria (mtDNA), has been relatively understudied. Mitochondria are increasingly recognized as important mediators of innate immune responses, not only because they are the main source of energy required for costly immune responses, but also because by-products of mitochondrial metabolism, such as reactive oxygen species (ROS), may have direct microbicidal action. Yet, it is currently unclear how naturally occurring variation in mtDNA contributes to heterogeneity in infection outcomes. In this review article, we describe potential sources of variation in mitochondrial function that may arise due to mutations in vital nuclear and mitochondrial components of energy production or due to a disruption in mito-nuclear crosstalk. We then highlight how these changes in mitochondrial function can impact immune responses, focusing on their effects on ATP- and ROS-generating pathways, as well as immune signaling. Finally, we outline how being a powerful and genetically tractable model of infection, immunity and mitochondrial genetics makes the fruit fly Drosophila melanogaster ideally suited to dissect mitochondrial effects on innate immune responses to infection.
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- 2020
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33. Cryptic Prophages Contribution for Campylobacter jejuni and Campylobacter coli Introgression
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Luís Tanoeiro, Mónica Oleastro, Alexandra Nunes, Andreia T. Marques, Sílvia Vaz Duarte, João Paulo Gomes, António Pedro Alves Matos, Jorge M. B. Vítor, and Filipa F. Vale
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bacteriophage ,introgression ,Campylobacter ,host range ,Biology (General) ,QH301-705.5 - Abstract
Campylobacter coli and C. jejuni, the causing agents of campylobacteriosis, are described to be undergoing introgression events, i.e., the transference of genetic material between different species, with some isolates sharing almost a quarter of its genome. The participation of phages in introgression events and consequent impact on host ecology and evolution remain elusive. Three distinct prophages, named C. jejuni integrated elements 1, 2, and 4 (CJIE1, CJIE2, and CJIE4), are described in C. jejuni. Here, we identified two unreported prophages, Campylobacter coli integrated elements 1 and 2 (CCIE1 and CCIE2 prophages), which are C. coli homologues of CJIE1 and CJIE2, respectively. No induction was achieved for both prophages. Conversely, induction assays on CJIE1 and CJIE2 point towards the inducibility of these prophages. CCIE2-, CJIE1-, and CJIE4-like prophages were identified in a Campylobacter spp. population of 840 genomes, and phylogenetic analysis revealed clustering in three major groups: CJIE1-CCIE1, CJIE2-CCIE2, and CJIE4, clearly segregating prophages from C. jejuni and C. coli, but not from human- and nonhuman-derived isolates, corroborating the flowing between animals and humans in the agricultural context. Punctual bacteriophage host-jumps were observed in the context of C. jejuni and C. coli, and although random chance cannot be fully discarded, these observations seem to implicate prophages in evolutionary introgression events that are modulating the hybridization of C. jejuni and C. coli species.
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- 2022
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34. Acute effects of different resistance training loads on cardiac autonomic modulation in hypertensive postmenopausal women
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Arthur F. Vale, Juliana A. Carneiro, Paulo C. V. Jardim, Thiago V. Jardim, James Steele, James P. Fisher, and Paulo Gentil
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Heart rate variability ,Resistance training ,Hypertension ,Autonomic modulation ,Medicine - Abstract
Abstract Background Individuals with arterial hypertension often have an autonomic nervous system (ANS) imbalance with predominance of sympathetic ANS. This predominance can lead to injury of several organs affecting its functioning. There is evidence that performing high intensity resistance training (RT) with heavier loads and a lower number of repetitions results in lower cardiovascular stress when compared with lighter loads and a higher number of repetitions. However, the effects of different protocols of RT in autonomic modulation are not known. Therefore, the aim of the study was to analyze and compare the effects of different protocols of high intensity of effort RT on autonomic cardiac modulation of hypertensive women. Methods A randomized crossover design clinical trial was conducted with 15 postmenopausal hypertensive women who underwent a control session and two high intensity RT protocols involving 6 and 15 repetition maximum (RM). Heart rate variability (HRV), systolic blood pressure (SBP), diastolic blood pressure (DBP), heart rate (HR) and double product (DP) were collected pre, immediately post, 1 h post, and 24 h post each protocol. Repeated-measures ANOVA were used. Results SBP was higher for 6RM than control immediately after session (p
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- 2018
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35. Genomic Analysis of Prophages from Klebsiella pneumoniae Clinical Isolates
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Andreia T. Marques, Luís Tanoeiro, Aida Duarte, Luisa Gonçalves, Jorge M. B. Vítor, and Filipa F. Vale
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K. pneumoniae genomes ,prophages ,bacteriophage ,bioinformatics ,genomic analysis ,comparative genomics ,Biology (General) ,QH301-705.5 - Abstract
Klebsiella pneumoniae is an increasing threat to public health and represents one of the most concerning pathogens involved in life-threatening infections. The resistant and virulence determinants are coded by mobile genetic elements which can easily spread between bacteria populations and co-evolve with its genomic host. In this study, we present the full genomic sequences, insertion sites and phylogenetic analysis of 150 prophages found in 40 K. pneumoniae clinical isolates obtained from an outbreak in a Portuguese hospital. All strains harbored at least one prophage and we identified 104 intact prophages (69.3%). The prophage size ranges from 29.7 to 50.6 kbp, coding between 32 and 78 putative genes. The prophage GC content is 51.2%, lower than the average GC content of 57.1% in K. pneumoniae. Complete prophages were classified into three families in the order Caudolovirales: Myoviridae (59.6%), Siphoviridae (38.5%) and Podoviridae (1.9%). In addition, an alignment and phylogenetic analysis revealed nine distinct clusters. Evidence of recombination was detected within the genome of some prophages but, in most cases, proteins involved in viral structure, transcription, replication and regulation (lysogenic/lysis) were maintained. These results support the knowledge that prophages are diverse and widely disseminated in K. pneumoniae genomes, contributing to the evolution of this species and conferring additional phenotypes. Moreover, we identified K. pneumoniae prophages in a set of endolysin genes, which were found to code for proteins with lysozyme activity, cleaving the β-1,4 linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in the peptidoglycan network and thus representing genes with the potential for lysin phage therapy.
- Published
- 2021
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36. Acute and Chronic Effects of Interval Training on the Immune System: A Systematic Review with Meta-Analysis
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Daniel Souza, Arthur F. Vale, Anderson Silva, Murilo A. S. Araújo, Célio A. de Paula Júnior, Claudio A. B. de Lira, Rodrigo Ramirez-Campillo, Wagner Martins, and Paulo Gentil
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immunity ,immunologic monitoring ,immunoglobulin A ,aerobic capacity ,physical activity ,high-intensity interval exercise ,Biology (General) ,QH301-705.5 - Abstract
Purpose: To summarize the evidence regarding the acute and chronic effects of interval training (IT) in the immune system through a systematic review with meta-analysis. Design: Systematic review with meta-analysis. Data source: English, Portuguese and Spanish languages search of the electronic databases Pubmed/Medline, Scopus, and SciELO. Eligibility criteria: Studies such as clinical trials, randomized cross-over trials and randomized clinical trials, investigating the acute and chronic effects of IT on the immune outcomes in humans. Results: Of the 175 studies retrieved, 35 were included in the qualitative analysis and 18 in a meta-analysis. Within-group analysis detected significant acute decrease after IT on immunoglobulin A (IgA) secretory rate (n = 115; MD = −15.46 µg·min−1; 95%CI, −28.3 to 2.66; p = 0.02), total leucocyte count increase (n = 137; MD = 2.58 × 103 µL−1; 95%CI, 1.79 to 3.38; p < 0.001), increase in lymphocyte count immediately after exercise (n = 125; MD = 1.3 × 103 µL−1; 95%CI, 0.86 to 1.75; p < 0.001), and decrease during recovery (30 to 180 min post-exercise) (n = 125; MD = −0.36 × 103 µL−1;−0.57 to −0.15; p < 0.001). No effect was detected on absolute IgA (n = 127; MD = 47.5 µg·mL−1; 95%CI, −10.6 to 105.6; p = 0.11). Overall, IT might acutely reduce leucocyte function. Regarding chronic effects IT improved immune function without change leucocyte count. Conclusion: IT might provide a transient disturbance on the immune system, followed by reduced immune function. However, regular IT performance induces favorable adaptations on immune function.
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- 2021
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37. Infection avoidance behavior: Viral exposure reduces the motivation to forage in female Drosophila melanogaster
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Pedro F. Vale and Michael D. Jardine
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avoidance behavior ,drosophila ,dcv ,foraging ,infection ,Biology (General) ,QH301-705.5 - Abstract
Infection avoidance behaviors are the first line of defense against pathogenic encounters. Behavioral plasticity in response to internal or external cues of infection can therefore generate potentially significant heterogeneity in infection. We tested whether Drosophila melanogaster exhibits infection avoidance behavior, and whether this behavior is modified by prior exposure to Drosophila C Virus (DCV) and by the risk of DCV encounter. We examined 2 measures of infection avoidance: (1) the motivation to seek out food sources in the presence of an infection risk and (2) the preference to land on a clean food source over a potentially infectious source. While we found no evidence for preference of clean food sources over potentially infectious ones, previously exposed female flies showed lower motivation to pick a food source when presented with a risk of encountering DCV. We discuss the relevance of behavioral plasticity during foraging for host fitness and pathogen spread.
- Published
- 2017
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38. The immune regulation and epidemiological consequences of immune priming inDrosophila
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Arun Prakash, Florence Fenner, Biswajit Shit, Tiina S. Salminen, Katy M. Monteith, Imroze Khan, and Pedro F. Vale
- Abstract
Invertebrates lack the specialized immune-memory cells responsible for vertebrate-like acquired immunity. However, there is increasing evidence that past infection by the same pathogen can ‘prime’ the insect immune response, resulting in improved survival upon reinfection. The mechanisms underlying these phenomenological accounts of priming are diverse, and often not completely clear. Here, we investigated the generality, specificity and mechanistic basis of immune priming in the fruit flyDrosophila melanogasterwhen infected with the gram-negative bacterial pathogenProvidencia rettgeri. We further explore the epidemiological consequences of immune priming and find it has the potential to curtail pathogen transmission by reducing pathogen shedding. We find that priming inDrosophilais a long-lasting, pathogen-specific response, occurring in several fly genetic backgrounds and is particularly stronger in male flies. Mechanistically, we find that the enhanced survival of individuals primed with an initial non-lethal bacterial inoculum coincides with a transient decrease in bacterial loads, and that this is likely driven by the IMD-responsive antimicrobial-peptideDiptericin-Bin the fat body. Further, we show that whileDiptericinsare required as the effector of bacterial clearance, it is not solely sufficient for immune priming, and requires regulation by the peptidoglycan recognition proteinsPGRP-LB, PGRP-LCandPGRP-LE. We discuss potential explanations for the observed sex differences in priming, and discuss the epidemiological consequences of innate immune priming in invertebrates.Author summaryImmunisation using attenuated or inactivated pathogens remains one of the most successful public health practices to reduce the incidence of infectious diseases. Immunisation works because humans and other vertebrate animals have evolved an immune response capable of specific immune memory, which ensures a strong, precise, and effective response to a secondary infection. While invertebrates lack the vertebrate-like specialized immune memory cells responsible for acquired immunity, there is now substantial evidence that invertebrates are capable of immune priming, characterised by improved survival to a pathogenic infection following an initial exposure to an attenuated or inactivated pathogen. Here, we investigated the occurrence, generality, specificity and mechanistic basis of immune priming in fruit flies when infected with the gram-negative pathogenProvidencia rettgeri. We find that priming with an initial non-lethal bacterial inoculum results increased survival after a secondary lethal challenge with the same live bacterial pathogen, and that this protective response may last at least two weeks after the initial exposure, is particularly strong in male flies, and occurs in several genetic backgrounds. We also find that primed flies shed less pathogen during infection, suggesting that priming can be a useful tool to reduce pathogen transmission in insects.
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- 2023
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39. Structure of Rhodolith Beds and Surrounding Habitats at the Doce River Shelf (Brazil)
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Vitória L. Holz, Ricardo G. Bahia, Cláudia S. Karez, Fernanda V. Vieira, Fernando C. Moraes, Nicholas F. Vale, Daniela B. Sudatti, Leonardo T. Salgado, Rodrigo L. Moura, Gilberto M. Amado-Filho, and Alex C. Bastos
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carbonate reefs ,rhodolith beds ,coralline algae ,mesophotic habitat ,bryozoa ,espírito santo continental shelf ,Biology (General) ,QH301-705.5 - Abstract
The world’s largest rhodolith beds have been reported from the Brazilian continental shelf. Highly biodiverse beds are located in Southeast Brazil, but ecological aspects of these beds remain unknown. Despite their ecological importance, rhodolith beds (RBs) have recently been subjected to a severe threat, when more than 35 million cubic meters of mining residues slid down a mountainside on 5 November 2015, after a collapse of a gigantic dam upstream (the Mariana disaster), causing a huge impact on the Doce River. Our aim is to assess rhodolith beds and adjacent coralline formations on the Doce River Shelf (DRS) after the dam collapse. This paper describes the distribution, abundance, vitality, size and shape, as well as unmapped bryozoan rich sediment formations in this area, serving as baseline knowledge for environmental monitoring. Four distinct biogenic sea bottom habitats (bryozoan bottoms, rhodolith beds, carbonate concretions, and reefs) were recognized at different depth ranges with distribution indicated to be mostly related to the local sedimentary regime. Mud sediments dominated the seafloor up to 35 m depth. On the mid shelf, bryozoan bottoms were recorded from 35 to 45 m depth. Crustose coralline algae (CCA) occurring as rhodoliths and carbonate concretions extend over 1953 km2 in the mid and outer shelf. Rhodolith beds predominate in these areas, totaling 1521 km2 of sea bottom and were more abundant at depths between 45 and 65 m, occupying an extensive area south of the Doce River mouth. Northward, rhodolith beds are less abundant or absent likely due to the long-term deposition of fine sediments in this region. Carbonate concretions and reefs covered by CCA occupy sparse areas on the outer shelf (65−105 m depth). Differences in rhodolith features recorded, including coverage, density and size, may be related to the Doce River sedimentation and related factors (e.g., hydrodynamics, depth, and light). However, since there are no previous detailed studies on RBs along the DRS, we could not assess the impact of sedimentation of dam wastes on RBs’ abundance and density. In any case, these are valuable results for the further monitoring of long-term effects. Considering that the growth of these rhodoliths is relatively slow, and that they are affected by the sedimentation from the Doce River, the implementation of a management and conservation plan for this area is necessary in order to preserve this ecosystem.
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- 2020
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40. Antioxidant effect of the pequi oil (Caryocar brasiliense) on the hepatic tissue of rats trained by exhaustive swimming exercises
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A. F. Vale, H. H. Ferreira, E. J. Benetti, A. C. S. Rebelo, A. C. R. Figueiredo, E. C. Barbosa, and K. Simões
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fígado ,antioxidante ,exercícios ,estresse oxidativo ,Science ,Biology (General) ,QH301-705.5 ,Zoology ,QL1-991 ,Botany ,QK1-989 - Abstract
Abstract Increased oxygen consumption and activation of specific metabolic pathways during or after physical exercise lead to the formation of reactive oxygen and nitrogen species. An investigation was made into the effects of pequi oil supplementation in protecting liver cells against injury resulting from oxidative stress. The experiments involved 20 male adult Wistar rats ( Rattus norvegicus). The animals were divided into four experimental groups: Group 1: sedentary control group; Group 2: exercise control group; Group 3: supplemented sedentary group; and Group 4: supplemented exercise group. Supplementation consisted of pequi oil administered by oral gavage (400 mg). The animals of the exercised groups were subjected to 20 swimming sessions for 5 weeks (with progressive increase of 10 minutes until exhaustion). Samples were collected from the right hepatic lobe for histopathological analysis and determination of malondialdehyde levels. The histopathological analyses revealed that the animals of the exercised control group had moderate liver damage, while the animals of the supplemented exercised group had slight tissue damage, and the sedentary control and sedentary supplemented groups showed no tissue damage. The malondialdehyde levels showed higher and statistically significant in exercise control group when compared to the other evaluated groups (p
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- 2018
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41. Ageing leads to reduced specificity of antimicrobial peptide responses in drosophila melanogaster
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Biswajit Shit, Arun Prakash, Saubhik Sarkar, Pedro F. Vale, and Imroze Khan
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antimicrobial peptides ,General Immunology and Microbiology ,ageing ,immune senescence ,pathogen resistance ,sexual dimorphism ,immune specificity ,General Medicine ,General Agricultural and Biological Sciences ,General Biochemistry, Genetics and Molecular Biology ,General Environmental Science - Abstract
Evolutionary theory predicts a late-life decline in the force of natural selection, possibly leading to late-life deregulations of the immune system. A potential outcome of such deregulations is the inability to produce specific immunity against target pathogens. We tested this possibility by infecting multiple Drosophila melanogaster lines (with bacterial pathogens) across age groups, where either individual or different combinations of Imd- and Toll-inducible antimicrobial peptides (AMPs) were deleted using CRISPR gene editing. We show a high degree of non-redundancy and pathogen-specificity of AMPs in young flies: in some cases, even a single AMP could confer complete resistance. However, ageing led to drastic reductions in such specificity to target pathogens, warranting the action of multiple AMPs across Imd and Toll pathways. Moreover, use of diverse AMPs either lacked survival benefits or even accompanied survival costs post-infection. These features were also sexually dimorphic: females required a larger repertoire of AMPs than males but extracted equivalent survival benefits. Finally, age-specific expansion of the AMP-repertoire was accompanied with ageing-induced downregulation of negative-regulators of the Imd pathway and damage to renal function post-infection, as features of poorly regulated immunity. Overall, we could highlight the potentially non-adaptive role of ageing in producing less-specific AMP responses, across sexes and pathogens.
- Published
- 2022
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42. Variation in mitochondrial DNA affects locomotor activity and sleep in Drosophila melanogaster
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Lucy Anderson, M. Florencia Camus, Katy M. Monteith, Tiina S. Salminen, Pedro F. Vale, Tampere University, and BioMediTech
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Male ,Adenosine Triphosphate ,Drosophila melanogaster ,Genetics ,Animals ,Drosophila ,Female ,3111 Biomedicine ,Sleep ,DNA, Mitochondrial ,Locomotion ,Genetics (clinical) ,Mitochondria - Abstract
Mitochondria are organelles that produce cellular energy in the form of ATP through oxidative phosphorylation, and this primary function is conserved among many taxa. Locomotion is a trait that is highly reliant on metabolic function and expected to be greatly affected by disruptions to mitochondrial performance. To this end, we aimed to examine how activity and sleep vary between Drosophila melanogaster strains with different geographic origins, how these patterns are affected by mitochondrial DNA (mtDNA) variation, and how breaking up co-evolved mito-nuclear gene combinations affect the studied activity traits. Our results demonstrate that Drosophila strains from different locations differ in sleep and activity, and that females are generally more active than males. By comparing activity and sleep of mtDNA variants introgressed onto a common nuclear background in cytoplasmic hybrid (cybrid) strains, we were able to quantify the among-line variance attributable to mitochondrial DNA, and we establish that mtDNA variation affects both activity and sleep, in a sex-specific manner. Altogether our study highlights the important role that mitochondrial genome variation plays on organismal physiology and behaviour.
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- 2022
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43. A possible relationship between gluconeogenesis and glycogen metabolism in rabbits during myocardial ischemia
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RAQUEL R. DE AGUIAR, DANIELA F. VALE, RENATO M. DA SILVA, YOLANDA P. MUNIZ, FERNANDA ANTUNES, CARLOS LOGULLO, ANDRÉ L.A. OLIVEIRA, and ADRIANA J. DE ALMEIDA
- Subjects
gene expression ,glycogen ,ischemia ,myocardium ,rabbit ,Science - Abstract
ABSTRACT Ischemia is responsible for many metabolic abnormalities in the heart, causing changes in organ function. One of modifications occurring in the ischemic cell is changing from aerobic to anaerobic metabolism. This change causes the predominance of the use of carbohydrates as an energy substrate instead of lipids. In this case, the glycogen is essential to the maintenance of heart energy intake, being an important reserve to resist the stress caused by hypoxia, using glycolysis and lactic acid fermentation. In order to study the glucose anaerobic pathways utilization and understand the metabolic adaptations, New Zealand white rabbits were subjected to ischemia caused by Inflow occlusion technique. The animals were monitored during surgery by pH and lactate levels. Transcription analysis of the pyruvate kinase, lactate dehydrogenase and phosphoenolpyruvate carboxykinase enzymes were performed by qRT-PCR, and glycogen quantification was determined enzymatically. Pyruvate kinase transcription increased during ischemia, followed by glycogen consumption content. The gluconeogenesis increased in control and ischemia moments, suggesting a relationship between gluconeogenesis and glycogen metabolism. This result shows the significant contribution of these substrates in the organ energy supply and demonstrates the capacity of the heart to adapt the metabolism after this injury, sustaining the homeostasis during short-term myocardial ischemia.
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- 2017
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44. Nonlinear disease tolerance curves reveal distinct components of host responses to viral infection
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Vanika Gupta and Pedro F. Vale
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infection tolerance ,dose–response curve ,drosophila ,drosophila c virus ,invertebrate immunity ,antiviral response ,Science - Abstract
The ability to tolerate infection is a key component of host defence and offers potential novel therapeutic approaches for infectious diseases. To yield successful targets for therapeutic intervention, it is important that the analytical tools employed to measure disease tolerance are able to capture distinct host responses to infection. Here, we show that commonly used methods that estimate tolerance as a linear relationship should be complemented with more flexible, nonlinear estimates of this relationship which may reveal variation in distinct components such as host vigour, sensitivity to increases in pathogen loads, and the severity of the infection. To illustrate this, we measured the survival of Drosophila melanogaster carrying either a functional or non-functional regulator of the JAK-STAT immune pathway (G9a) when challenged with a range of concentrations of Drosophila C virus (DCV). While classical linear model analyses indicated that G9a affected tolerance only in females, a more powerful nonlinear logistic model showed that G9a mediates viral tolerance to different extents in both sexes. This analysis also revealed that G9a acts by changing the sensitivity to increasing pathogen burdens, but does not reduce the ultimate severity of disease. These results indicate that fitting nonlinear models to host health–pathogen burden relationships may offer better and more detailed estimates of disease tolerance.
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- 2017
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45. Liposomal Delivery of Newly Identified Prophage Lysins in a
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Diana, Morais, Luís, Tanoeiro, Andreia T, Marques, Tiago, Gonçalves, Aida, Duarte, António Pedro Alves, Matos, Joana S, Vital, Maria Eugénia Meirinhos, Cruz, Manuela Colla, Carvalheiro, Elsa, Anes, Jorge M B, Vítor, Maria Manuela, Gaspar, and Filipa F, Vale
- Subjects
Prophages ,Gram-Negative Bacteria ,Liposomes ,Pseudomonas aeruginosa ,Animals ,Humans ,Peptidoglycan ,Gram-Positive Bacteria ,Anti-Bacterial Agents - Published
- 2022
46. Host genetics and pathogen species modulate infection-induced changes in social aggregation behaviour
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Valéria Romano, Amy Lussiana, Katy M. Monteith, Andrew J. J. MacIntosh, Pedro F. Vale, Institut méditerranéen de biodiversité et d'écologie marine et continentale (IMBE), and Avignon Université (AU)-Aix Marseille Université (AMU)-Institut de recherche pour le développement [IRD] : UMR237-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Male ,social aggregation ,bacterial infection ,Bacterial Infections ,infection avoidance ,Agricultural and Biological Sciences (miscellaneous) ,sickness behaviour ,Drosophila melanogaster ,[SDE]Environmental Sciences ,genetic variation ,pathogen dose ,Animals ,Drosophila ,Female ,Social Behavior ,General Agricultural and Biological Sciences - Abstract
Identifying how infection modifies host behaviours that determine social contact networks is important for understanding heterogeneity in infectious disease dynamics. Here, we investigate whether group social behaviour is modified during bacterial infection in fruit flies ( Drosophila melanogaster ) according to pathogen species, infectious dose, host genetic background and sex. In one experiment, we find that systemic infection with four different bacterial species results in a reduction in the mean pairwise distance within infected female flies, and that the extent of this change depends on pathogen species. However, susceptible flies did not show any evidence of avoidance in the presence of infected flies. In a separate experiment, we observed genetic- and sex-based variation in social aggregation within infected, same-sex groups, with infected female flies aggregating more closely than infected males. In general, our results confirm that bacterial infection induces changes in fruit fly behaviour across a range of pathogen species, but also highlight that these effects vary between fly genetic backgrounds and can be sex-specific. We discuss possible explanations for sex differences in social aggregation and their consequences for individual variation in pathogen transmission.
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- 2022
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47. Mitochondrial perturbations enhance cell-mediated innate immunity in Drosophila
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Laura Vesala, Yuliya Basikhina, Tea Tuomela, Pedro F. Vale, and Tiina S. Salminen
- Abstract
Mitochondria participate in various cellular processes including energy metabolism, apoptosis, stress responses, inflammation and immunity. While mitochondrial dysfunction contributes to many diseases, mitochondrial perturbations can also be beneficial, a phenomenon coined mitohormesis. We investigated how mitochondrial variation contributes to the heterogeneity of infection outcomes and whether moderate mitochondrial dysfunction could benefit immune-challenged individuals. We took three approaches to model variation in mitochondrial oxidative phosphorylation (OXPHOS) in Drosophila melanogaster: i) inherited natural mitochondrial DNA (mtDNA) variation present in all tissues; ii) sporadic, tissue-specific silencing of OXPHOS-related genes and iii) systemic pharmacological inhibition of OXPHOS, and studied their effects on the cell-mediated innate immune response. When perturbing mitochondrial function, we detected signs of activated cellular innate immunity without infection and upon infection the perturbation caused enhanced immune response. Our data indicate that mitochondrial dysfunction can be beneficial in immune-challenged individuals when it is mild enough and does not cause complications to the host, and ultimately causes variation in infection outcomes between individuals.Author summaryMitochondria are eukaryotic cell organelles involved in various cellular processes including metabolism and cell signaling. The role of mitochondria and the variation of mitochondrial function in immune responses have been increasingly studied across various models. Mitochondrial dysfunction, originating from either the nuclear or the mitochondrial genome, is generally considered harmful for the organism. What is not yet well understood is how immune responses are affected by mitochondrial dysfunction, for example in the context of mitochondrial disease. Here, we show that in the fruit fly Drosophila melanogaster mild systemic or immune cell -specific mitochondrial perturbations enhance the innate immune response of the host to parasitoids. Furthermore, we show that due to the mitochondrial perturbations the cell-mediated immune system of the host is activated in the absence of infection and makes the immune responses more efficient upon infection. Importantly, our results demonstrate that mitochondrial genome variation is one of the underlying factors contributing to the variation in infection outcomes among individuals. Our results therefore contribute to the understanding of innate immunity, by providing information about the genetic causes underlying the variation seen in the response to infections.
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- 2022
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48. Testing evolutionary explanations for the lifespan benefit of dietary restriction in fruit flies ( Drosophila melanogaster )
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Katy M. Monteith, Eevi Savola, Clara Montgomery, Fergal M Waldron, Pedro F. Vale, and Craig A. Walling
- Subjects
0106 biological sciences ,0301 basic medicine ,Calorie ,media_common.quotation_subject ,Longevity ,Zoology ,Biology ,Infections ,010603 evolutionary biology ,01 natural sciences ,03 medical and health sciences ,Stress, Physiological ,Pseudomonas ,Genetics ,medicine ,Animals ,bacteria ,Ecology, Evolution, Behavior and Systematics ,media_common ,Reproduction ,dietary restriction ,Original Articles ,Limiting ,Fecundity ,medicine.disease ,biology.organism_classification ,Biological Evolution ,infection ,Ageing ,Malnutrition ,Drosophila melanogaster ,030104 developmental biology ,ageing ,Wounds and Injuries ,Female ,Original Article ,diet ,General Agricultural and Biological Sciences ,Diet Therapy - Abstract
Dietary restriction (DR), limiting calories or specific nutrients without malnutrition, extends lifespan across diverse taxa. Traditionally, this lifespan extension has been explained as a result of diet-mediated changes in the trade-off between lifespan and reproduction, with survival favoured when resources are scarce. However, a recently proposed alternative suggests that the selective benefit of the response to DR is the maintenance of reproduction. This hypothesis predicts that lifespan extension is a side effect of benign laboratory conditions, and DR individuals would be frailer and unable to deal with additional stressors, and thus lifespan extension should disappear under more stressful conditions. We tested this by rearing outbred female fruit flies (Drosophila melanogaster) on 10 different protein:carbohydrate diets. Flies were either infected with a bacterial pathogen (Pseudomonas entomophila), injured with a sterile pinprick or unstressed. We monitored lifespan, fecundity and measures of ageing. DR extended lifespan and reduced reproduction irrespective of injury and infection. Infected flies on lower protein diets had particularly poor survival. Exposure to infection and injury did not substantially alter the relationship between diet and ageing patterns. These results do not provide support for lifespan extension under DR being a side effect of benign laboratory conditions. This article is protected by copyright. All rights reserved.
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- 2021
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49. Ageing leads to nonspecific antimicrobial peptide responses in Drosophila melanogaster
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Biswajit Shit, Arun Prakash, Saubhik Sarkar, Pedro F. Vale, and Imroze Khan
- Abstract
Evolutionary theory predicts a late-life decline in the force of natural selection, possibly leading to late-life deregulations of the immune system. A potential outcome of such immune-deregulation is the inability to produce specific immunity against target pathogens. We tested this possibility by infecting multiple Drosophila melanogaster lines (with bacterial pathogens) across age-groups, where either individual or different combinations of Imd- and Toll-inducible antimicrobial peptides (AMPs) were deleted using CRISPR gene editing. We show a high degree of non-redundancy and pathogen-specificity of AMPs in young flies: in some cases, even a single AMP could confer complete resistance. In contrast, ageing led to a complete loss of such specificity, warranting the action of multiple AMPs across Imd- and Toll-pathways during infections. Moreover, use of diverse AMPs either had no survival benefits, or even accompanied survival costs post-infection. These features were also sexually dimorphic: females expressed a larger repertoire of AMPs than males, but extracted equivalent survival benefits. Finally, age-specific expansion of the AMP-pool was associated with downregulation of negative-regulators of the Imd-pathway and a potential damage to renal function, as features of poorly-regulated immunity, Overall, we could establish ageing as an important driver of nonspecific AMP responses, across sexes and bacterial infections.
- Published
- 2022
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50. The restriction factor pastrel is associated with host vigor, viral titer, and variation in disease tolerance during Drosophila C Virus infection
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Megan A.M. Kutzer, Vanika Gupta, Kyriaki Neophytou, Vincent Doublet, Katy M. Monteith, and Pedro F. Vale
- Abstract
Genetic variation for both resistance and disease tolerance has been described in a range of species infected with bacterial, viral and fungal pathogens. In Drosophila melanogaster, genetic variation in mortality following systemic Drosophila C Virus (DCV) infection has been shown to be driven by large effect polymorphisms in the viral restriction factor pastrel (pst). However, it is unclear if pst impacts variation in DCV titres (i.e. resistance), or if it also contributes to disease tolerance. We investigated systemic infection across a range of DCV challenge doses spanning nine orders of magnitude, in males and females of ten Drosophila Genetic Reference Panel (DGRP) lines carrying either a susceptible (S) or resistant (R) pst allele. Our results uncover among-line variation in fly survival, viral titers, and disease tolerance measured both as the ability to maintain survival (mortality tolerance) and reproduction (fecundity tolerance). We confirm the role of pst in resistance, as fly lines with the resistant (R) pst allele experienced lower viral titers, and we uncover novel effects of pst on host vigor, as flies carrying the R allele exhibited higher survival and fecundity even in the absence of infection. Finally, we found significant variation in the expression of the JAK-STAT ligand upd3 and the epigenetic regulator of JAK-STAT G9a. While G9a has been previously shown to mediate tolerance of DCV infection, we found no correlation between the expression of either upd3 or G9a on fly tolerance or resistance. Our work highlights the importance of both resistance and tolerance in viral defence.
- Published
- 2022
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