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A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics

Authors :
Eloe-Fadrosh, Emiley A
Eloe-Fadrosh, Emiley A
Mungall, Christopher J
Miller, Mark Andrew
Smith, Montana
Patil, Sujay Sanjeev
Kelliher, Julia M
Johnson, Leah YD
Rodriguez, Francisca E
Chain, Patrick SG
Hu, Bin
Thornton, Michael B
McCue, Lee Ann
McHardy, Alice Carolyn
Harris, Nomi L
Reddy, TBK
Mukherjee, Supratim
Hunter, Christopher I
Walls, Ramona
Schriml, Lynn M
Eloe-Fadrosh, Emiley A
Eloe-Fadrosh, Emiley A
Mungall, Christopher J
Miller, Mark Andrew
Smith, Montana
Patil, Sujay Sanjeev
Kelliher, Julia M
Johnson, Leah YD
Rodriguez, Francisca E
Chain, Patrick SG
Hu, Bin
Thornton, Michael B
McCue, Lee Ann
McHardy, Alice Carolyn
Harris, Nomi L
Reddy, TBK
Mukherjee, Supratim
Hunter, Christopher I
Walls, Ramona
Schriml, Lynn M
Publication Year :
2024

Abstract

Comparative analysis of (meta)genomes necessitates aggregation, integration, and synthesis of well-annotated data using standards. The Genomic Standards Consortium (GSC) collaborates with the research community to develop and maintain the Minimum Information about any (x) Sequence (MIxS) reporting standard for genomic data. To facilitate the use of the GSC's MIxS reporting standard, we provide a description of the structure and terminology, how to navigate ontologies for required terms in MIxS, and demonstrate practical usage through a soil metagenome example.

Details

Database :
OAIster
Publication Type :
Electronic Resource
Accession number :
edsoai.on1452696279
Document Type :
Electronic Resource