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Answer ALS, a large-scale resource for sporadic and familial ALS combining clinical and multi-omics data from induced pluripotent cell lines.

Authors :
Baxi, Emily G
Baxi, Emily G
Thompson, Terri
Li, Jonathan
Kaye, Julia A
Lim, Ryan G
Wu, Jie
Ramamoorthy, Divya
Lima, Leandro
Vaibhav, Vineet
Matlock, Andrea
Frank, Aaron
Coyne, Alyssa N
Landin, Barry
Ornelas, Loren
Mosmiller, Elizabeth
Thrower, Sara
Farr, S Michelle
Panther, Lindsey
Gomez, Emilda
Galvez, Erick
Perez, Daniel
Meepe, Imara
Lei, Susan
Mandefro, Berhan
Trost, Hannah
Pinedo, Louis
Banuelos, Maria G
Liu, Chunyan
Moran, Ruby
Garcia, Veronica
Workman, Michael
Ho, Richie
Wyman, Stacia
Roggenbuck, Jennifer
Harms, Matthew B
Stocksdale, Jennifer
Miramontes, Ricardo
Wang, Keona
Venkatraman, Vidya
Holewenski, Ronald
Sundararaman, Niveda
Pandey, Rakhi
Manalo, Danica-Mae
Donde, Aneesh
Huynh, Nhan
Adam, Miriam
Wassie, Brook T
Vertudes, Edward
Amirani, Naufa
Raja, Krishna
Thomas, Reuben
Hayes, Lindsey
Lenail, Alex
Cerezo, Aianna
Luppino, Sarah
Farrar, Alanna
Pothier, Lindsay
Prina, Carolyn
Morgan, Todd
Jamil, Arish
Heintzman, Sarah
Jockel-Balsarotti, Jennifer
Karanja, Elizabeth
Markway, Jesse
McCallum, Molly
Joslin, Ben
Alibazoglu, Deniz
Kolb, Stephen
Ajroud-Driss, Senda
Baloh, Robert
Heitzman, Daragh
Miller, Tim
Glass, Jonathan D
Patel-Murray, Natasha Leanna
Yu, Hong
Sinani, Ervin
Vigneswaran, Prasha
Sherman, Alexander V
Ahmad, Omar
Roy, Promit
Beavers, Jay C
Zeiler, Steven
Krakauer, John W
Agurto, Carla
Cecchi, Guillermo
Bellard, Mary
Raghav, Yogindra
Sachs, Karen
Ehrenberger, Tobias
Bruce, Elizabeth
Cudkowicz, Merit E
Maragakis, Nicholas
Norel, Raquel
Van Eyk, Jennifer E
Finkbeiner, Steven
Berry, James
Sareen, Dhruv
Thompson, Leslie M
Fraenkel, Ernest
Svendsen, Clive N
Baxi, Emily G
Baxi, Emily G
Thompson, Terri
Li, Jonathan
Kaye, Julia A
Lim, Ryan G
Wu, Jie
Ramamoorthy, Divya
Lima, Leandro
Vaibhav, Vineet
Matlock, Andrea
Frank, Aaron
Coyne, Alyssa N
Landin, Barry
Ornelas, Loren
Mosmiller, Elizabeth
Thrower, Sara
Farr, S Michelle
Panther, Lindsey
Gomez, Emilda
Galvez, Erick
Perez, Daniel
Meepe, Imara
Lei, Susan
Mandefro, Berhan
Trost, Hannah
Pinedo, Louis
Banuelos, Maria G
Liu, Chunyan
Moran, Ruby
Garcia, Veronica
Workman, Michael
Ho, Richie
Wyman, Stacia
Roggenbuck, Jennifer
Harms, Matthew B
Stocksdale, Jennifer
Miramontes, Ricardo
Wang, Keona
Venkatraman, Vidya
Holewenski, Ronald
Sundararaman, Niveda
Pandey, Rakhi
Manalo, Danica-Mae
Donde, Aneesh
Huynh, Nhan
Adam, Miriam
Wassie, Brook T
Vertudes, Edward
Amirani, Naufa
Raja, Krishna
Thomas, Reuben
Hayes, Lindsey
Lenail, Alex
Cerezo, Aianna
Luppino, Sarah
Farrar, Alanna
Pothier, Lindsay
Prina, Carolyn
Morgan, Todd
Jamil, Arish
Heintzman, Sarah
Jockel-Balsarotti, Jennifer
Karanja, Elizabeth
Markway, Jesse
McCallum, Molly
Joslin, Ben
Alibazoglu, Deniz
Kolb, Stephen
Ajroud-Driss, Senda
Baloh, Robert
Heitzman, Daragh
Miller, Tim
Glass, Jonathan D
Patel-Murray, Natasha Leanna
Yu, Hong
Sinani, Ervin
Vigneswaran, Prasha
Sherman, Alexander V
Ahmad, Omar
Roy, Promit
Beavers, Jay C
Zeiler, Steven
Krakauer, John W
Agurto, Carla
Cecchi, Guillermo
Bellard, Mary
Raghav, Yogindra
Sachs, Karen
Ehrenberger, Tobias
Bruce, Elizabeth
Cudkowicz, Merit E
Maragakis, Nicholas
Norel, Raquel
Van Eyk, Jennifer E
Finkbeiner, Steven
Berry, James
Sareen, Dhruv
Thompson, Leslie M
Fraenkel, Ernest
Svendsen, Clive N
Source :
Nature neuroscience; vol 25, iss 2, 226-237; 1097-6256
Publication Year :
2022

Abstract

Answer ALS is a biological and clinical resource of patient-derived, induced pluripotent stem (iPS) cell lines, multi-omic data derived from iPS neurons and longitudinal clinical and smartphone data from over 1,000 patients with ALS. This resource provides population-level biological and clinical data that may be employed to identify clinical-molecular-biochemical subtypes of amyotrophic lateral sclerosis (ALS). A unique smartphone-based system was employed to collect deep clinical data, including fine motor activity, speech, breathing and linguistics/cognition. The iPS spinal neurons were blood derived from each patient and these cells underwent multi-omic analytics including whole-genome sequencing, RNA transcriptomics, ATAC-sequencing and proteomics. The intent of these data is for the generation of integrated clinical and biological signatures using bioinformatics, statistics and computational biology to establish patterns that may lead to a better understanding of the underlying mechanisms of disease, including subgroup identification. A web portal for open-source sharing of all data was developed for widespread community-based data analytics.

Details

Database :
OAIster
Journal :
Nature neuroscience; vol 25, iss 2, 226-237; 1097-6256
Notes :
application/pdf, Nature neuroscience vol 25, iss 2, 226-237 1097-6256
Publication Type :
Electronic Resource
Accession number :
edsoai.on1325585699
Document Type :
Electronic Resource