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Unraveling COVID-19:A Large-Scale Characterization of 4.5 Million COVID-19 Cases Using CHARYBDIS

Authors :
Kostka, Kristin
Duarte-Salles, Talita
Prats-Uribe, Albert
Sena, Anthony G.
Pistillo, Andrea
Khalid, Sara
Lai, Lana Y.H.
Golozar, Asieh
Alshammari, Thamir M.
Dawoud, Dalia M.
Nyberg, Fredrik
Wilcox, Adam B.
Andryc, Alan
Williams, Andrew
Ostropolets, Anna
Areia, Carlos
Jung, Chi Young
Harle, Christopher A.
Reich, Christian G.
Blacketer, Clair
Morales, Daniel R.
Dorr, David A.
Burn, Edward
Roel, Elena
Tan, Eng Hooi
Minty, Evan
De Falco, Frank
De Maeztu, Gabriel
Lipori, Gigi
Alghoul, Hiba
Zhu, Hong
Thomas, Jason A.
Bian, Jiang
Park, Jimyung
Roldán, Jordi Martínez
Posada, Jose D.
Banda, Juan M.
Horcajada, Juan P.
Kohler, Julianna
Shah, Karishma
Natarajan, Karthik
Lynch, Kristine E.
Liu, Li
Schilling, Lisa M.
Recalde, Martina
Spotnitz, Matthew
Gong, Mengchun
Matheny, Michael E.
Valveny, Neus
Weiskopf, Nicole G.
Shah, Nigam
Alser, Osaid
Casajust, Paula
Park, Rae Woong
Schuff, Robert
Seager, Sarah
Du Vall, Scott L.
You, Seng Chan
Song, Seokyoung
Fernández-Bertolín, Sergio
Fortin, Stephen
Magoc, Tanja
Falconer, Thomas
Subbian, Vignesh
Huser, Vojtech
Ahmed, Waheed Ul Rahman
Carter, William
Guan, Yin
Galvan, Yankuic
He, Xing
Rijnbeek, Peter R.
Hripcsak, George
Ryan, Patrick B.
Suchard, Marc A.
Prieto-Alhambra, Daniel
Kostka, Kristin
Duarte-Salles, Talita
Prats-Uribe, Albert
Sena, Anthony G.
Pistillo, Andrea
Khalid, Sara
Lai, Lana Y.H.
Golozar, Asieh
Alshammari, Thamir M.
Dawoud, Dalia M.
Nyberg, Fredrik
Wilcox, Adam B.
Andryc, Alan
Williams, Andrew
Ostropolets, Anna
Areia, Carlos
Jung, Chi Young
Harle, Christopher A.
Reich, Christian G.
Blacketer, Clair
Morales, Daniel R.
Dorr, David A.
Burn, Edward
Roel, Elena
Tan, Eng Hooi
Minty, Evan
De Falco, Frank
De Maeztu, Gabriel
Lipori, Gigi
Alghoul, Hiba
Zhu, Hong
Thomas, Jason A.
Bian, Jiang
Park, Jimyung
Roldán, Jordi Martínez
Posada, Jose D.
Banda, Juan M.
Horcajada, Juan P.
Kohler, Julianna
Shah, Karishma
Natarajan, Karthik
Lynch, Kristine E.
Liu, Li
Schilling, Lisa M.
Recalde, Martina
Spotnitz, Matthew
Gong, Mengchun
Matheny, Michael E.
Valveny, Neus
Weiskopf, Nicole G.
Shah, Nigam
Alser, Osaid
Casajust, Paula
Park, Rae Woong
Schuff, Robert
Seager, Sarah
Du Vall, Scott L.
You, Seng Chan
Song, Seokyoung
Fernández-Bertolín, Sergio
Fortin, Stephen
Magoc, Tanja
Falconer, Thomas
Subbian, Vignesh
Huser, Vojtech
Ahmed, Waheed Ul Rahman
Carter, William
Guan, Yin
Galvan, Yankuic
He, Xing
Rijnbeek, Peter R.
Hripcsak, George
Ryan, Patrick B.
Suchard, Marc A.
Prieto-Alhambra, Daniel
Source :
Kostka , K , Duarte-Salles , T , Prats-Uribe , A , Sena , A G , Pistillo , A , Khalid , S , Lai , L Y H , Golozar , A , Alshammari , T M , Dawoud , D M , Nyberg , F , Wilcox , A B , Andryc , A , Williams , A , Ostropolets , A , Areia , C , Jung , C Y , Harle , C A , Reich , C G , Blacketer , C , Morales , D R , Dorr , D A , Burn , E , Roel , E , Tan , E H , Minty , E , De Falco , F , De Maeztu , G , Lipori , G , Alghoul , H , Zhu , H , Thomas , J A , Bian , J , Park , J , Roldán , J M , Posada , J D , Banda , J M , Horcajada , J P , Kohler , J , Shah , K , Natarajan , K , Lynch , K E , Liu , L , Schilling , L M , Recalde , M , Spotnitz , M , Gong , M , Matheny , M E , Valveny , N , Weiskopf , N G , Shah , N , Alser , O , Casajust , P , Park , R W , Schuff , R , Seager , S , Du Vall , S L , You , S C , Song , S , Fernández-Bertolín , S , Fortin , S , Magoc , T , Falconer , T , Subbian , V , Huser , V , Ahmed , W U R , Carter , W , Guan , Y , Galvan , Y , He , X , Rijnbeek , P R , Hripcsak , G , Ryan , P B , Suchard , M A & Prieto-Alhambra , D 2022 , ' Unraveling COVID-19 : A Large-Scale Characterization of 4.5 Million COVID-19 Cases Using CHARYBDIS ' , Clinical Epidemiology , vol. 14 , pp. 369-384 .
Publication Year :
2022

Abstract

Purpose: Routinely collected real world data (RWD) have great utility in aiding the novel coronavirus disease (COVID-19) pandemic response. Here we present the international Observational Health Data Sciences and Informatics (OHDSI) Characterizing Health Associated Risks and Your Baseline Disease In SARS-COV-2 (CHARYBDIS) framework for standardisation and analysis of COVID-19 RWD. Patients and Methods: We conducted a descriptive retrospective database study using a federated network of data partners in the United States, Europe (the Netherlands, Spain, the UK, Germany, France and Italy) and Asia (South Korea and China). The study protocol and analytical package were released on 11th June 2020 and are iteratively updated via GitHub. We identified three nonmutually exclusive cohorts of 4,537,153 individuals with a clinical COVID-19 diagnosis or positive test, 886,193 hospitalized with COVID-19, and 113,627 hospitalized with COVID-19 requiring intensive services. Results: We aggregated over 22,000 unique characteristics describing patients with COVID-19. All comorbidities, symptoms, medications, and outcomes are described by cohort in aggregate counts and are readily available online. Globally, we observed similarities in the USA and Europe: More women diagnosed than men but more men hospitalized than women, most diagnosed cases between 25 and 60 years of age versus most hospitalized cases between 60 and 80 years of age. South Korea differed with more women than men hospitalized. Common comorbidities included type 2 diabetes, hypertension, chronic kidney disease and heart disease. Common presenting symptoms were dyspnea, cough and fever. Symptom data availability was more common in hospitalized cohorts than diagnosed. Conclusion: We constructed a global, multi-centre view to describe trends in COVID-19 progression, management and evolution over time. By characterising baseline variability in patients and geography, our work provides critical context that may otherwi

Details

Database :
OAIster
Journal :
Kostka , K , Duarte-Salles , T , Prats-Uribe , A , Sena , A G , Pistillo , A , Khalid , S , Lai , L Y H , Golozar , A , Alshammari , T M , Dawoud , D M , Nyberg , F , Wilcox , A B , Andryc , A , Williams , A , Ostropolets , A , Areia , C , Jung , C Y , Harle , C A , Reich , C G , Blacketer , C , Morales , D R , Dorr , D A , Burn , E , Roel , E , Tan , E H , Minty , E , De Falco , F , De Maeztu , G , Lipori , G , Alghoul , H , Zhu , H , Thomas , J A , Bian , J , Park , J , Roldán , J M , Posada , J D , Banda , J M , Horcajada , J P , Kohler , J , Shah , K , Natarajan , K , Lynch , K E , Liu , L , Schilling , L M , Recalde , M , Spotnitz , M , Gong , M , Matheny , M E , Valveny , N , Weiskopf , N G , Shah , N , Alser , O , Casajust , P , Park , R W , Schuff , R , Seager , S , Du Vall , S L , You , S C , Song , S , Fernández-Bertolín , S , Fortin , S , Magoc , T , Falconer , T , Subbian , V , Huser , V , Ahmed , W U R , Carter , W , Guan , Y , Galvan , Y , He , X , Rijnbeek , P R , Hripcsak , G , Ryan , P B , Suchard , M A & Prieto-Alhambra , D 2022 , ' Unraveling COVID-19 : A Large-Scale Characterization of 4.5 Million COVID-19 Cases Using CHARYBDIS ' , Clinical Epidemiology , vol. 14 , pp. 369-384 .
Notes :
application/pdf, English
Publication Type :
Electronic Resource
Accession number :
edsoai.on1322185091
Document Type :
Electronic Resource