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Species Distribution Modelling: Contrasting presence-only models with plot abundance data

Authors :
Gomes, Vitor H.F.
IJff, Stéphanie D.
Raes, Niels
Amaral, Iêda Leão
Salomão, Rafael P.
de Souza Coelho, Luiz
de Almeida Matos, Francisca Dionízia
Castilho, Carolina V.
de Andrade Lima Filho, Diogenes
López, Dairon Cárdenas
Guevara, Juan Ernesto
Magnusson, William E
Phillips, Oliver L.
Wittmann, Florian
de Jesus Veiga Carim, Marcelo
Pires Martins, Maria
Irume, Victória Irume
Sabatier, Daniel
Molino, Jean-François
Banki, Olaf
da Silva Guimarães, José Renan
Pitman, Nigel C. A.
Fernandez Piedade, Maria Teresa
Mendoza, Abel Monteagudo
Garcia Luize, Bruno
Venticinque, Eduardo Martins
Moraes de Leão Novo, Evlyn Márcia
Vargas, Percy Núñez
Silva, Thiago Sanna Freire
Manzatto, Angelo Gilberto
Terborgh, John
Costa Reis, Neidiane Farias
Montero, Juan Carlos
Casula, Katia Regina
Marimon, Beatriz S.
Marimon Junior, Ben Hur
Coronado, Euridice N. Honorio
Feldpausch, Ted R.
Duque, Alvaro
Zartman, Charles Eugene
Castaño Arboleda, Nicolás
Killeen, Timothy J.
Mostacedo, Bonifacio
Vasquez, Rodolfo
Schöngart, Jochen
Assis, Rafael L.
Medeiros, Marcelo Brilhante
Fragomeni Simon, Marcelo
Andrade, Ana
Laurance, William F.
Camargo, Jose Luis C.
Demarchi, Layon O.
Laurance, Susan G.W.
de Sousa Farias, Emmanuelle
Mendonça Nascimento, Henrique Eduardo
Cardenas Revilla, Juan David
Quaresma, Adriano
Costa, Flávia R.C
Guimarães Vieira, Ima Célia
Barçante Ladvocat Cintra, Bruno
Castellanos, Hernán
Brienen, Roel
Stevenson, Pablo R.
Feitosa, Yuri
Duivenvoorden, Joost F.
Aymard C., Gerardo A.
Mogollón, Hugo F.
Targhetta, Natalia
Comiskey, James A.
Vicentini, Alberto
Lopes, Aline
Damasco, Gabriel
Davila, Nallarett
García-Villacorta, Roosevelt
Levis, Carolina
Schietti, Juliana
Souza, Priscila
Emilio, Thaise
Alonso, Alfonso
Neill, David
Dallmeier, Francisco
Ferreira, Leandro
Araujo-Murakami, Alejandro
Praia, Daniel
do Amaral, Dário Dantas
Carvalho, Fernanda Antunes
de Souza, Fernanda Coelho
Feeley, Kenneth J.
Arroyo, Luzmila
Pansonato, Marcelo Petratti
Gribel, Rogerio
Villa, Boris
Licona, Juan Carlos
Fine, Paul V.A.
Cerón, Carlos
Baraloto, Christopher
Jimenez, Eliana
Stropp, Juliana
Engel, Julien
Silveira, Marcos
Peñuela Mora, Maria Cristina
Petronelli, Pascal
et al.
Gomes, Vitor H.F.
IJff, Stéphanie D.
Raes, Niels
Amaral, Iêda Leão
Salomão, Rafael P.
de Souza Coelho, Luiz
de Almeida Matos, Francisca Dionízia
Castilho, Carolina V.
de Andrade Lima Filho, Diogenes
López, Dairon Cárdenas
Guevara, Juan Ernesto
Magnusson, William E
Phillips, Oliver L.
Wittmann, Florian
de Jesus Veiga Carim, Marcelo
Pires Martins, Maria
Irume, Victória Irume
Sabatier, Daniel
Molino, Jean-François
Banki, Olaf
da Silva Guimarães, José Renan
Pitman, Nigel C. A.
Fernandez Piedade, Maria Teresa
Mendoza, Abel Monteagudo
Garcia Luize, Bruno
Venticinque, Eduardo Martins
Moraes de Leão Novo, Evlyn Márcia
Vargas, Percy Núñez
Silva, Thiago Sanna Freire
Manzatto, Angelo Gilberto
Terborgh, John
Costa Reis, Neidiane Farias
Montero, Juan Carlos
Casula, Katia Regina
Marimon, Beatriz S.
Marimon Junior, Ben Hur
Coronado, Euridice N. Honorio
Feldpausch, Ted R.
Duque, Alvaro
Zartman, Charles Eugene
Castaño Arboleda, Nicolás
Killeen, Timothy J.
Mostacedo, Bonifacio
Vasquez, Rodolfo
Schöngart, Jochen
Assis, Rafael L.
Medeiros, Marcelo Brilhante
Fragomeni Simon, Marcelo
Andrade, Ana
Laurance, William F.
Camargo, Jose Luis C.
Demarchi, Layon O.
Laurance, Susan G.W.
de Sousa Farias, Emmanuelle
Mendonça Nascimento, Henrique Eduardo
Cardenas Revilla, Juan David
Quaresma, Adriano
Costa, Flávia R.C
Guimarães Vieira, Ima Célia
Barçante Ladvocat Cintra, Bruno
Castellanos, Hernán
Brienen, Roel
Stevenson, Pablo R.
Feitosa, Yuri
Duivenvoorden, Joost F.
Aymard C., Gerardo A.
Mogollón, Hugo F.
Targhetta, Natalia
Comiskey, James A.
Vicentini, Alberto
Lopes, Aline
Damasco, Gabriel
Davila, Nallarett
García-Villacorta, Roosevelt
Levis, Carolina
Schietti, Juliana
Souza, Priscila
Emilio, Thaise
Alonso, Alfonso
Neill, David
Dallmeier, Francisco
Ferreira, Leandro
Araujo-Murakami, Alejandro
Praia, Daniel
do Amaral, Dário Dantas
Carvalho, Fernanda Antunes
de Souza, Fernanda Coelho
Feeley, Kenneth J.
Arroyo, Luzmila
Pansonato, Marcelo Petratti
Gribel, Rogerio
Villa, Boris
Licona, Juan Carlos
Fine, Paul V.A.
Cerón, Carlos
Baraloto, Christopher
Jimenez, Eliana
Stropp, Juliana
Engel, Julien
Silveira, Marcos
Peñuela Mora, Maria Cristina
Petronelli, Pascal
et al.
Source :
Scientific Reports
Publication Year :
2018

Abstract

Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and MaxEnt predictions relates to a spatial abundance model, based on a large plot dataset for Amazonian tree species, using inverse distance weighting (IDW). We also propose a new pipeline to deal with inconsistencies in NHCs and to limit the area of occupancy of the species. We found a significant but weak positive relationship between the distribution of NHCs and IDW for 66% of the species. The relationship between SDMs and IDW was also significant but weakly positive for 95% of the species, and sensitivity for both analyses was high. Furthermore, the pipeline removed half of the NHCs records. Presence-only SDM applications should consider this limitation, especially for large biodiversity assessments projects, when they are automatically generated without subsequent checking. Our pipeline provides a conservative estimate of a species' area of occupancy, within an area slightly larger than its extent of occurrence, compatible to e.g. IUCN red list assessments.

Details

Database :
OAIster
Journal :
Scientific Reports
Notes :
Amazonie, text, English
Publication Type :
Electronic Resource
Accession number :
edsoai.on1262252418
Document Type :
Electronic Resource