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Identification of four novel susceptibility loci for oestrogen receptor negative breast cancer

Authors :
Couch, Fergus J.
Kuchenbaecker, Karoline B.
Michailidou, Kyriaki
Mendoza-Fandino, Gustavo A.
Nord, Silje
Lilyquist, Janna
Olswold, Curtis
Hallberg, Emily
Agata, Simona
Ahsan, Habibul
Aittomaeki, Kristiina
Ambrosone, Christine
Andrulis, Irene L.
Anton-Culver, Hoda
Arndt, Volker
Arun, Banu K.
Arver, Brita
Barile, Monica
Barkardottir, Rosa B.
Barrowdale, Daniel
Beckmann, Lars
Beckmann, Matthias W.
Benitez, Javier
Blank, Stephanie V.
Blomqvist, Carl
Bogdanova, Natalia V.
Bojesen, Stig E.
Bolla, Manjeet K.
Bonanni, Bernardo
Brauch, Hiltrud
Brenner, Hermann
Burwinkel, Barbara
Buys, Saundra S.
Caldes, Trinidad
Caligo, Maria A.
Canzian, Federico
Carpenter, Jane
Chang-Claude, Jenny
Chanock, Stephen J.
Chung, Wendy K.
Claes, Kathleen B. M.
Cox, Angela
Cross, Simon S.
Cunningham, Julie M.
Czene, Kamila
Daly, Mary B.
Damiola, Francesca
Darabi, Hatef
de la Hoya, Miguel
Devilee, Peter
Diez, Orland
Ding, Yuan C.
Dolcetti, Riccardo
Domchek, Susan M.
Dorfling, Cecilia M.
dos-Santos-Silva, Isabel
Dumont, Martine
Dunning, Alison M.
Eccles, Diana M.
Ehrencrona, Hans
Ekici, Arif B.
Eliassen, Heather
Ellis, Steve
Fasching, Peter A.
Figueroa, Jonine
Flesch-Janys, Dieter
Foersti, Asta
Fostira, Florentia
Foulkes, William D.
Friebel, Tara
Friedman, Eitan
Frost, Debra
Gabrielson, Marike
Gammon, Marilie D.
Ganz, Patricia A.
Gapstur, Susan M.
Garber, Judy
Gaudet, Mia M.
Gayther, Simon A.
Gerdes, Anne-Marie
Ghoussaini, Maya
Giles, Graham G.
Glendon, Gord
Godwin, Andrew K.
Goldberg, Mark S.
Goldgar, David E.
Gonzalez-Neira, Anna
Greene, Mark H.
Gronwald, Jacek
Guenel, Pascal
Gunter, Marc
Haeberle, Lothar
Haiman, Christopher A.
Hamann, Ute
Hansen, Thomas V. O.
Hart, Steven
Healey, Sue
Heikkinen, Tuomas
Henderson, Brian E.
Herzog, Josef
Hogervorst, Frans B. L.
Hollestelle, Antoinette
Hooning, Maartje J.
Hoover, Robert N.
Hopper, John L.
Humphreys, Keith
Hunter, David J.
Huzarski, Tomasz
Imyanitov, Evgeny N.
Isaacs, Claudine
Jakubowska, Anna
James, Paul
Janavicius, Ramunas
Birk Jensen, Uffe
John, Esther M.
Jones, Michael
Kabisch, Maria
Kar, Siddhartha
Karlan, Beth Y.
Khan, Sofia
Khaw, Kay-Tee
Kibriya, Muhammad G.
Knight, Julia A.
Ko, Yon-Dschun
Konstantopoulou, Irene
Kosma, Veli-Matti
Kristensen, Vessela
Kwong, Ava
Laitman, Yael
Lambrechts, Diether
Lazaro, Conxi
Lee, Eunjung
Le Marchand, Loic
Lester, Jenny
Lindblom, Annika
Lindor, Noralane
Lindstrom, Sara
Liu, Jianjun
Long, Jirong
Lubinski, Jan
Mai, Phuong L.
Makalic, Enes
Malone, Kathleen E.
Mannermaa, Arto
Manoukian, Siranoush
Margolin, Sara
Marme, Frederik
Martens, John W. M.
McGuffog, Lesley
Meindl, Alfons
Miller, Austin
Milne, Roger L.
Miron, Penelope
Montagna, Marco
Mazoyer, Sylvie
Mulligan, Anna M.
Muranen, Taru A.
Nathanson, Katherine L.
Neuhausen, Susan L.
Nevanlinna, Heli
Nordestgaard, Borge G.
Nussbaum, Robert L.
Offit, Kenneth
Olah, Edith
Olopade, Olufunmilayo I.
Olson, Janet E.
Osorio, Ana
Park, Sue K.
Peeters, Petra H.
Peissel, Bernard
Peterlongo, Paolo
Peto, Julian
Phelan, Catherine M.
Pilarski, Robert
Poppe, Bruce
Pylkaes, Katri
Radice, Paolo
Rahman, Nazneen
Rantala, Johanna
Rappaport, Christine
Rennert, Gad
Richardson, Andrea
Robson, Mark
Romieu, Isabelle
Rudolph, Anja
Rutgers, Emiel J.
Sanchez, Maria-Jose
Santella, Regina M.
Sawyer, Elinor J.
Schmidt, Daniel F.
Schmidt, Marjanka K.
Schmutzler, Rita K.
Schumacher, Fredrick
Scott, Rodney
Senter, Leigha
Sharma, Priyanka
Simard, Jacques
Singer, Christian F.
Sinilnikova, Olga M.
Soucy, Penny
Southey, Melissa
Steinemann, Doris
Stenmark-Askmalm, Marie
Stoppa-Lyonnet, Dominique
Swerdlow, Anthony
Szabo, Csilla I.
Tamimi, Rulla
Tapper, William
Teixeira, Manuel R.
Teo, Soo-Hwang
Terry, Mary B.
Thomassen, Mads
Thompson, Deborah
Tihomirova, Laima
Toland, Amanda E.
Tollenaar, Robert A. E. M.
Tomlinson, Ian
Truong, Therese
Tsimiklis, Helen
Teule, Alex
Tumino, Rosario
Tung, Nadine
Turnbull, Clare
Ursin, Giski
van Deurzen, Carolien H. M.
van Rensburg, Elizabeth J.
Varon-Mateeva, Raymonda
Wang, Zhaoming
Wang-Gohrke, Shan
Weiderpass, Elisabete
Weitzel, Jeffrey N.
Whittemore, Alice
Wildiers, Hans
Winqvist, Robert
Yang, Xiaohong R.
Yannoukakos, Drakoulis
Yao, Song
Pilar Zamora, M.
Zheng, Wei
Hall, Per
Kraft, Peter
Vachon, Celine
Slager, Susan
Chenevix-Trench, Georgia
Pharoah, Paul D. P.
Monteiro, Alvaro A. N.
Garcia-Closas, Montserrat
Easton, Douglas F.
Antoniou, Antonis C.
Couch, Fergus J.
Kuchenbaecker, Karoline B.
Michailidou, Kyriaki
Mendoza-Fandino, Gustavo A.
Nord, Silje
Lilyquist, Janna
Olswold, Curtis
Hallberg, Emily
Agata, Simona
Ahsan, Habibul
Aittomaeki, Kristiina
Ambrosone, Christine
Andrulis, Irene L.
Anton-Culver, Hoda
Arndt, Volker
Arun, Banu K.
Arver, Brita
Barile, Monica
Barkardottir, Rosa B.
Barrowdale, Daniel
Beckmann, Lars
Beckmann, Matthias W.
Benitez, Javier
Blank, Stephanie V.
Blomqvist, Carl
Bogdanova, Natalia V.
Bojesen, Stig E.
Bolla, Manjeet K.
Bonanni, Bernardo
Brauch, Hiltrud
Brenner, Hermann
Burwinkel, Barbara
Buys, Saundra S.
Caldes, Trinidad
Caligo, Maria A.
Canzian, Federico
Carpenter, Jane
Chang-Claude, Jenny
Chanock, Stephen J.
Chung, Wendy K.
Claes, Kathleen B. M.
Cox, Angela
Cross, Simon S.
Cunningham, Julie M.
Czene, Kamila
Daly, Mary B.
Damiola, Francesca
Darabi, Hatef
de la Hoya, Miguel
Devilee, Peter
Diez, Orland
Ding, Yuan C.
Dolcetti, Riccardo
Domchek, Susan M.
Dorfling, Cecilia M.
dos-Santos-Silva, Isabel
Dumont, Martine
Dunning, Alison M.
Eccles, Diana M.
Ehrencrona, Hans
Ekici, Arif B.
Eliassen, Heather
Ellis, Steve
Fasching, Peter A.
Figueroa, Jonine
Flesch-Janys, Dieter
Foersti, Asta
Fostira, Florentia
Foulkes, William D.
Friebel, Tara
Friedman, Eitan
Frost, Debra
Gabrielson, Marike
Gammon, Marilie D.
Ganz, Patricia A.
Gapstur, Susan M.
Garber, Judy
Gaudet, Mia M.
Gayther, Simon A.
Gerdes, Anne-Marie
Ghoussaini, Maya
Giles, Graham G.
Glendon, Gord
Godwin, Andrew K.
Goldberg, Mark S.
Goldgar, David E.
Gonzalez-Neira, Anna
Greene, Mark H.
Gronwald, Jacek
Guenel, Pascal
Gunter, Marc
Haeberle, Lothar
Haiman, Christopher A.
Hamann, Ute
Hansen, Thomas V. O.
Hart, Steven
Healey, Sue
Heikkinen, Tuomas
Henderson, Brian E.
Herzog, Josef
Hogervorst, Frans B. L.
Hollestelle, Antoinette
Hooning, Maartje J.
Hoover, Robert N.
Hopper, John L.
Humphreys, Keith
Hunter, David J.
Huzarski, Tomasz
Imyanitov, Evgeny N.
Isaacs, Claudine
Jakubowska, Anna
James, Paul
Janavicius, Ramunas
Birk Jensen, Uffe
John, Esther M.
Jones, Michael
Kabisch, Maria
Kar, Siddhartha
Karlan, Beth Y.
Khan, Sofia
Khaw, Kay-Tee
Kibriya, Muhammad G.
Knight, Julia A.
Ko, Yon-Dschun
Konstantopoulou, Irene
Kosma, Veli-Matti
Kristensen, Vessela
Kwong, Ava
Laitman, Yael
Lambrechts, Diether
Lazaro, Conxi
Lee, Eunjung
Le Marchand, Loic
Lester, Jenny
Lindblom, Annika
Lindor, Noralane
Lindstrom, Sara
Liu, Jianjun
Long, Jirong
Lubinski, Jan
Mai, Phuong L.
Makalic, Enes
Malone, Kathleen E.
Mannermaa, Arto
Manoukian, Siranoush
Margolin, Sara
Marme, Frederik
Martens, John W. M.
McGuffog, Lesley
Meindl, Alfons
Miller, Austin
Milne, Roger L.
Miron, Penelope
Montagna, Marco
Mazoyer, Sylvie
Mulligan, Anna M.
Muranen, Taru A.
Nathanson, Katherine L.
Neuhausen, Susan L.
Nevanlinna, Heli
Nordestgaard, Borge G.
Nussbaum, Robert L.
Offit, Kenneth
Olah, Edith
Olopade, Olufunmilayo I.
Olson, Janet E.
Osorio, Ana
Park, Sue K.
Peeters, Petra H.
Peissel, Bernard
Peterlongo, Paolo
Peto, Julian
Phelan, Catherine M.
Pilarski, Robert
Poppe, Bruce
Pylkaes, Katri
Radice, Paolo
Rahman, Nazneen
Rantala, Johanna
Rappaport, Christine
Rennert, Gad
Richardson, Andrea
Robson, Mark
Romieu, Isabelle
Rudolph, Anja
Rutgers, Emiel J.
Sanchez, Maria-Jose
Santella, Regina M.
Sawyer, Elinor J.
Schmidt, Daniel F.
Schmidt, Marjanka K.
Schmutzler, Rita K.
Schumacher, Fredrick
Scott, Rodney
Senter, Leigha
Sharma, Priyanka
Simard, Jacques
Singer, Christian F.
Sinilnikova, Olga M.
Soucy, Penny
Southey, Melissa
Steinemann, Doris
Stenmark-Askmalm, Marie
Stoppa-Lyonnet, Dominique
Swerdlow, Anthony
Szabo, Csilla I.
Tamimi, Rulla
Tapper, William
Teixeira, Manuel R.
Teo, Soo-Hwang
Terry, Mary B.
Thomassen, Mads
Thompson, Deborah
Tihomirova, Laima
Toland, Amanda E.
Tollenaar, Robert A. E. M.
Tomlinson, Ian
Truong, Therese
Tsimiklis, Helen
Teule, Alex
Tumino, Rosario
Tung, Nadine
Turnbull, Clare
Ursin, Giski
van Deurzen, Carolien H. M.
van Rensburg, Elizabeth J.
Varon-Mateeva, Raymonda
Wang, Zhaoming
Wang-Gohrke, Shan
Weiderpass, Elisabete
Weitzel, Jeffrey N.
Whittemore, Alice
Wildiers, Hans
Winqvist, Robert
Yang, Xiaohong R.
Yannoukakos, Drakoulis
Yao, Song
Pilar Zamora, M.
Zheng, Wei
Hall, Per
Kraft, Peter
Vachon, Celine
Slager, Susan
Chenevix-Trench, Georgia
Pharoah, Paul D. P.
Monteiro, Alvaro A. N.
Garcia-Closas, Montserrat
Easton, Douglas F.
Antoniou, Antonis C.
Publication Year :
2016

Abstract

Common variants in 94 loci have been associated with breast cancer including 15 loci with genome-wide significant associations (P<5 x 10(-8)) with oestrogen receptor (ER)-negative breast cancer and BRCA1-associated breast cancer risk. In this study, to identify new ER-negative susceptibility loci, we performed a meta-analysis of 11 genome-wide association studies (GWAS) consisting of 4,939 ER-negative cases and 14,352 controls, combined with 7,333 ER-negative cases and 42,468 controls and 15,252 BRCA1 mutation carriers genotyped on the iCOGS array. We identify four previously unidentified loci including two loci at 13q22 near KLF5, a 2p23.2 locus near WDR43 and a 2q33 locus near PPIL3 that display genome-wide significant associations with ER-negative breast cancer. In addition, 19 known breast cancer risk loci have genome-wide significant associations and 40 had moderate associations (P<0.05) with ER-negative disease. Using functional and eQTL studies we implicate TRMT61B and WDR43 at 2p23.2 and PPIL3 at 2q33 in ER-negative breast cancer aetiology. All ER-negative loci combined account for similar to 11% of familial relative risk for ER-negative disease and may contribute to improved ER-negative and BRCA1 breast cancer risk prediction.<br />Funding Agencies|European Community Seventh Framework Programme [223175, HEALTH-F2-2009-223175]; Cancer Research UK [C1287/A10118, C1287/A10710, C1281/A12014, C5047/A8384, C5047/A15007, C5047/A10692, C12292/A11174]; National Institutes of Health [CA116201, CA128978, CA176785, CA192393]; National Institutes of Health, Post-Cancer GWAS initiative [1U19 CA148537, 1U19 CA148065, 1U19 CA148112]; National Institutes of Health, GAME-ON initiative; Canadian Institutes of Health Research (CIHR); Breast Cancer Res. Foundation; Ovarian Cancer Research Fund; Department of Defence [W81XWH-10-1-0341]; Florida Breast Cancer Foundation

Details

Database :
OAIster
Notes :
application/pdf, English
Publication Type :
Electronic Resource
Accession number :
edsoai.on1233342591
Document Type :
Electronic Resource
Full Text :
https://doi.org/10.1038.ncomms11375