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Scoring of tumor-infiltrating lymphocytes: From visual estimation to machine learning

Authors :
Klauschen, Frederick
Müller, Klaus Robert
Binder, Alexander
Bockmayr, Michael
Hägele, M.
Seegerer, P.
Wienert, Stephan
Pruneri, Giancarlo
de Maria, S.
Badve, S
Michiels, Stefan
Nielsen, Torsten T.O.
Adams, Sylvia
Savas, Peter
Symmans, F.
Willis, Scooter
Gruosso, Tina
Park, Morag
Haibe-Kains, Benjamin
Gallas, Brandon
Thompson, Abbey A.M.
Cree, Ian
Sotiriou, Christos
Solinas, Cinzia
Preusser, Matthias
Hewitt, Stephen M
Rimm, David D.L.
Viale, Giuseppe
Loi, S.
Loibl, Sibylle
Salgado, Roberto
Denkert, Carsten
Klauschen, Frederick
Müller, Klaus Robert
Binder, Alexander
Bockmayr, Michael
Hägele, M.
Seegerer, P.
Wienert, Stephan
Pruneri, Giancarlo
de Maria, S.
Badve, S
Michiels, Stefan
Nielsen, Torsten T.O.
Adams, Sylvia
Savas, Peter
Symmans, F.
Willis, Scooter
Gruosso, Tina
Park, Morag
Haibe-Kains, Benjamin
Gallas, Brandon
Thompson, Abbey A.M.
Cree, Ian
Sotiriou, Christos
Solinas, Cinzia
Preusser, Matthias
Hewitt, Stephen M
Rimm, David D.L.
Viale, Giuseppe
Loi, S.
Loibl, Sibylle
Salgado, Roberto
Denkert, Carsten
Source :
Seminars in cancer biology, 52
Publication Year :
2018

Abstract

The extent of tumor-infiltrating lymphocytes (TILs), along with immunomodulatory ligands, tumor-mutational burden and other biomarkers, has been demonstrated to be a marker of response to immune-checkpoint therapy in several cancers. Pathologists have therefore started to devise standardized visual approaches to quantify TILs for therapy prediction. However, despite successful standardization efforts visual TIL estimation is slow, with limited precision and lacks the ability to evaluate more complex properties such as TIL distribution patterns. Therefore, computational image analysis approaches are needed to provide standardized and efficient TIL quantification. Here, we discuss different automated TIL scoring approaches ranging from classical image segmentation, where cell boundaries are identified and the resulting objects classified according to shape properties, to machine learning-based approaches that directly classify cells without segmentation but rely on large amounts of training data. In contrast to conventional machine learning (ML) approaches that are often criticized for their “black-box” characteristics, we also discuss explainable machine learning. Such approaches render ML results interpretable and explain the computational decision-making process through high-resolution heatmaps that highlight TILs and cancer cells and therefore allow for quantification and plausibility checks in biomedical research and diagnostics.<br />SCOPUS: re.j<br />info:eu-repo/semantics/published

Details

Database :
OAIster
Journal :
Seminars in cancer biology, 52
Notes :
2 full-text file(s): application/pdf | application/pdf, English
Publication Type :
Electronic Resource
Accession number :
edsoai.on1081039682
Document Type :
Electronic Resource