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skater: an R package for SNP-based kinship analysis, testing, and evaluation [version 1; peer review: 2 approved, 1 approved with reservations]
- Source :
- F1000Research. 11:18
- Publication Year :
- 2022
- Publisher :
- London, UK: F1000 Research Limited, 2022.
-
Abstract
- Motivation: SNP-based kinship analysis with genome-wide relationship estimation and IBD segment analysis methods produces results that often require further downstream process- ing and manipulation. A dedicated software package that consistently and intuitively imple- ments this analysis functionality is needed. Results: Here we present the skater R package for SNP-based kinship analysis, testing, and evaluation with R. The skater package contains a suite of well-documented tools for importing, parsing, and analyzing pedigree data, performing relationship degree inference, benchmarking relationship degree classification, and summarizing IBD segment data. Availability: The skater package is implemented as an R package and is released under the MIT license at https://github.com/signaturescience/skater. Documentation is available at https://signaturescience.github.io/skater.
Details
- ISSN :
- 20461402
- Volume :
- 11
- Database :
- F1000Research
- Journal :
- F1000Research
- Notes :
- [version 1; peer review: 2 approved, 1 approved with reservations]
- Publication Type :
- Academic Journal
- Accession number :
- edsfor.10.12688.f1000research.76004.1
- Document Type :
- software-tool
- Full Text :
- https://doi.org/10.12688/f1000research.76004.1