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Use of the informational spectrum methodology for rapid biological analysis of the novel coronavirus 2019-nCoV: prediction of potential receptor, natural reservoir, tropism and therapeutic/vaccine target [version 2; peer review: 1 approved, 1 approved with reservations]

Authors :
Veljko Veljkovic
Júlia Vergara-Alert
Joaquim Segalés
Slobodan Paessler
Author Affiliations :
<relatesTo>1</relatesTo>Biomed Protection, Galveston, TX, 77550, USA<br /><relatesTo>2</relatesTo>IRTA, Centre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), Campus de la Universitat Autònoma de Barcelona, Barcelona, 08193 Bellaterra, Spain<br /><relatesTo>3</relatesTo>Departament de Sanitat i Anatomia Animals, Universitat Autònoma de Barcelona (UAB), Barcelona, 08193 Bellaterra, Spain<br /><relatesTo>4</relatesTo>UAB, Centre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), Campus de la Universitat Autònoma de Barcelona, Barcelona, 08193 Bellaterra, Spain<br /><relatesTo>5</relatesTo>Department of Pathology, Galveston National Laboratory, University of Texas Medical Branch, Galveston, TX, 77555, USA
Source :
F1000Research. 9:52
Publication Year :
2020
Publisher :
London, UK: F1000 Research Limited, 2020.

Abstract

A novel coronavirus recently identified in Wuhan, China (2019-nCoV) has expanded the number of highly pathogenic coronaviruses affecting humans. The 2019-nCoV represents a potential epidemic or pandemic threat, which requires a quick response for preparedness against this infection. The present report uses the informational spectrum methodology to identify the possible origin and natural host of the new virus, as well as putative therapeutic and vaccine targets. The performed in silico analysis indicates that the newly emerging 2019-nCoV is closely related to severe acute respiratory syndrome (SARS)-CoV and, to a lesser degree, Middle East respiratory syndrome (MERS)-CoV. Moreover, the well-known SARS-CoV receptor (ACE2) might be a putative receptor for the novel virus as well. Actin protein was also suggested as a host factor that participates in cell entry and pathogenesis of 2019-nCoV; therefore, drugs modulating biological activity of this protein (e.g. ibuprofen) were suggested as potential candidates for treatment of this viral infection. Additional results indicated that civets and poultry are potential candidates for the natural reservoir of the 2019-nCoV, and that domain 288-330 of S1 protein from the 2019-nCoV represents promising therapeutic and/or vaccine target.

Details

ISSN :
20461402
Volume :
9
Database :
F1000Research
Journal :
F1000Research
Notes :
Updated Changes from Version 1 In the new version of the manuscript, actin protein is suggested as a host factor that participates in infection and pathogenesis of 2019-nCoV and drugs modulating the biological activity of these proteins (e.g., ibuprofen) were suggested as candidates that should be investigated for the treatment of 2019-nCoV infection. Added, were figures 5a and 5b demonstrating spectral difference between S1 proteins from human SARS-CoV and 2019-nCoV, (ii) figure 5c presenting the consensus informational spectrum of actin proteins from different mammalian species, and (iii) Table 1, Table 2, and Table 4 containing information about sequences which were used for analysis of SARS-CoV, 2019-nCoV and mammalian actin proteins which is presented in Figure 5., , [version 2; peer review: 1 approved, 1 approved with reservations]
Publication Type :
Academic Journal
Accession number :
edsfor.10.12688.f1000research.22149.2
Document Type :
brief-report
Full Text :
https://doi.org/10.12688/f1000research.22149.2