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Chromosome-scale assembly of the Verbenaceae species Queen’s Wreath (Petrea volubilis L.)

Authors :
John P. Hamilton
Brieanne Vaillancourt
Joshua C. Wood
C. Robin Buell
Source :
BMC Genomic Data, Vol 24, Iss 1, Pp 1-5 (2023)
Publication Year :
2023
Publisher :
BMC, 2023.

Abstract

Abstract Objectives Petrea volubilis, a member of the Order Lamiales and the Verbenaceae family, is an important horticultural species that has been used in traditional folk medicine. To provide a genome sequence for comparative studies within the Order Lamiales that includes important families such as Lamiaceae (mints), we generated a long-read, chromosome-scale genome assembly of this species. Data description Using a total of 45.5 Gb of Pacific Biosciences long read sequence, we generated a 480.2 Mb assembly of P. volubilis, of which, 93% is chromosome anchored. Representation of genic regions was robust with 96.6% of the Benchmarking of Universal Single Copy Orthologs present in the genome assembly. A total of 57.8% of the genome was annotated as a repetitive sequence. Using a gene annotation pipeline that included refinement of gene models using transcript evidence, 30,982 high confidence genes were annotated. Access to the P. volubilis genome will facilitate evolutionary studies in the Lamiales, a key order of Asterids that includes significant crop and medicinal plant species.

Details

Language :
English
ISSN :
27306844
Volume :
24
Issue :
1
Database :
Directory of Open Access Journals
Journal :
BMC Genomic Data
Publication Type :
Academic Journal
Accession number :
edsdoj.fa4d35a2ee7a418cbeec0981bdf9d8b4
Document Type :
article
Full Text :
https://doi.org/10.1186/s12863-023-01110-z