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Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis

Authors :
Xin Liu
Tao Sun
Anna Shcherbina
Qin Li
Inga Jarmoskaite
Kalli Kappel
Gokul Ramaswami
Rhiju Das
Anshul Kundaje
Jin Billy Li
Source :
Nature Communications, Vol 12, Iss 1, Pp 1-17 (2021)
Publication Year :
2021
Publisher :
Nature Portfolio, 2021.

Abstract

The RNA sequence and secondary structure regulate RNA editing by ADAR. Here the authors employ a CRISPR/Cas9-mediated saturation mutagenesis and machine learning to predict RNA editing efficiency of specific substrates.

Subjects

Subjects :
Science

Details

Language :
English
ISSN :
20411723
Volume :
12
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Nature Communications
Publication Type :
Academic Journal
Accession number :
edsdoj.f291ffe598744dbb9b94da4931988805
Document Type :
article
Full Text :
https://doi.org/10.1038/s41467-021-22489-2