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A survey of the sorghum transcriptome using single-molecule long reads

Authors :
Salah E. Abdel-Ghany
Michael Hamilton
Jennifer L. Jacobi
Peter Ngam
Nicholas Devitt
Faye Schilkey
Asa Ben-Hur
Anireddy S. N. Reddy
Source :
Nature Communications, Vol 7, Iss 1, Pp 1-11 (2016)
Publication Year :
2016
Publisher :
Nature Portfolio, 2016.

Abstract

Alternative splicing and alternative polyadenylation (APA) contribute to mRNA diversity but are difficult to assess using short read RNA-seq data. Here, the authors use single molecule long-read isoform sequencing and develop a computational pipeline to identify full-length splice isoforms and APA sites in sorghum.

Subjects

Subjects :
Science

Details

Language :
English
ISSN :
20411723
Volume :
7
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Nature Communications
Publication Type :
Academic Journal
Accession number :
edsdoj.bcaa70a959d04e6ca2c3634b67b09163
Document Type :
article
Full Text :
https://doi.org/10.1038/ncomms11706