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Complete chloroplast genome of two Arabis L. species from Korea and assessment of their phylogenetic relationship in plastome based phylogeny

Authors :
Asif S. Tamboli
Suhas K. Kadam
Jin-Suk Youn
JiYoung Yang
Jae Hong Pak
Sang-Hun Oh
Yeon-Sik Choo
Source :
Journal of Asia-Pacific Biodiversity, Vol 17, Iss 3, Pp 457-463 (2024)
Publication Year :
2024
Publisher :
Elsevier, 2024.

Abstract

Arabis stelleri DC. and A. takesimana Nakai belong to the family Brassicaceae. Arabis stelleri is widely distributed in East Asia, and A. takesimana is a Korean endemic plant. In this study, we report the complete chloroplast genomes of both species, measuring 153,577 bp for A. stelleri and 153,557 bp for A. takesimana. The plastome of A. stelleri comprises two inverted repeats (IRs) of 26,421 bp, a large single-copy (LSC) region measuring 82,705 bp, and a small single-copy (SSC) region of 18,030 bp. Whereas A. takesimana has IR regions of 26,426 bp, an LSC of 82,694 bp, and an SSC of 18,011 bp. Both the plastomes contain 131 total genes, 86 protein-coding genes, 37 tRNA genes, 8 rRNA genes, and 36.4% GC content. The organization and gene content of both plastomes were found to be similar to previously reported Arabis plastomes. In addition, we have tested the phylogenetic position of both the Arabis species and the relationship of the genus Arabis with other Brassicaceae members in comprehensive family-level plastome-based phylogeny. Arabis stelleri and A. takesimana are phylogenetically placed within the Arabis clade and show a close relationship to A. flagellosa, A. nipponica, A. paniculata, and A. hirsuta.

Details

Language :
English
ISSN :
2287884X
Volume :
17
Issue :
3
Database :
Directory of Open Access Journals
Journal :
Journal of Asia-Pacific Biodiversity
Publication Type :
Academic Journal
Accession number :
edsdoj.bb5f0063a03146d39ad1b0d0d7c4cdb8
Document Type :
article
Full Text :
https://doi.org/10.1016/j.japb.2024.03.001