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Data set for transcriptional response to depletion of the Shoc2 scaffolding protein

Authors :
Eric C. Rouchka
Myoungkun Jeoung
Eun Ryoung Jang
Jinpeng Liu
Chi Wang
Xiaohong Li
Emilia Galperin
Source :
Data in Brief, Vol 7, Iss , Pp 770-778 (2016)
Publication Year :
2016
Publisher :
Elsevier, 2016.

Abstract

The Suppressor of Clear, Caenorhabditis elegans Homolog (SHOC2) is a scaffold protein that positively modulates activity of the RAS/ERK1/2 MAP kinase signaling cascade. We set out to understand the ERK1/2 pathway transcriptional response transduced through the SHOC2 scaffolding module. This data article describes raw gene expression within triplicates of kidney fibroblast-like Cos1 cell line expressing non-targeting shRNA (Cos-NT) and triplicates of Cos1 cells depleted of SHOC2 using shRNA (Cos-LV1) upon activation of ERK1/2 pathway by the Epidermal Growth Factor Receptor (EGFR). The data referred here is available in NCBI׳s Gene Expression Omnibus (GEO), accession GEO: GSE67063 as well as NCBI׳s Sequence Read Archive (SRA), accession SRA: SRP056324. A complete analysis of the results can be found in “Shoc2-tranduced ERK1/2 motility signals – Novel insights from functional genomics”(Jeoung et al., 2016) [1].

Details

Language :
English
ISSN :
23523409
Volume :
7
Issue :
770-778
Database :
Directory of Open Access Journals
Journal :
Data in Brief
Publication Type :
Academic Journal
Accession number :
edsdoj.b75d814d66eb4b809d76aa0e3f6f7349
Document Type :
article
Full Text :
https://doi.org/10.1016/j.dib.2016.03.012