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Making fundamental scientific discoveries by combining information from literature, databases, and computational tools – An example

Authors :
Bastian Stielow
Clara Simon
Robert Liefke
Source :
Computational and Structural Biotechnology Journal, Vol 19, Iss , Pp 3027-3033 (2021)
Publication Year :
2021
Publisher :
Elsevier, 2021.

Abstract

In recent years, the amount of available literature, data and computational tools has increased exponentially, providing opportunities and challenges to make use of this vast amount of material. Here, we describe how we utilized publicly available information to identify the previously hardly characterized protein SAMD1 (SAM domain-containing protein 1) as a novel unmethylated CpG island-binding protein. This discovery is an example, how the richness of material and tools on the internet can be used to make scientific breakthroughs, but also the hurdles that may occur. Specifically, we discuss how the misrepresentation of SAMD1 in literature and databases may have prevented an earlier characterization of this protein and we address what can be learned from this example.

Details

Language :
English
ISSN :
20010370
Volume :
19
Issue :
3027-3033
Database :
Directory of Open Access Journals
Journal :
Computational and Structural Biotechnology Journal
Publication Type :
Academic Journal
Accession number :
edsdoj.95fe3ba7b64d49a288abcc62bdb92acc
Document Type :
article
Full Text :
https://doi.org/10.1016/j.csbj.2021.04.052