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NAPS: Integrating pose estimation and tag‐based tracking

Authors :
Scott W. Wolf
Dee M. Ruttenberg
Daniel Y. Knapp
Andrew E. Webb
Ian M. Traniello
Grace C. McKenzie‐Smith
Sophie A. Leheny
Joshua W. Shaevitz
Sarah D. Kocher
Source :
Methods in Ecology and Evolution, Vol 14, Iss 10, Pp 2541-2548 (2023)
Publication Year :
2023
Publisher :
Wiley, 2023.

Abstract

Abstract Significant advances in computational ethology have allowed the quantification of behaviour in unprecedented detail. Tracking animals in social groups, however, remains challenging as most existing methods can either capture pose or robustly retain individual identity over time but not both. To capture finely resolved behaviours while maintaining individual identity, we built NAPS (NAPS is ArUco Plus SLEAP), a hybrid tracking framework that combines state‐of‐the‐art, deep learning‐based methods for pose estimation (SLEAP) with unique markers for identity persistence (ArUco). We show that this framework allows the exploration of the social dynamics of the common eastern bumblebee (Bombus impatiens). We provide a stand‐alone Python package for implementing this framework along with detailed documentation to allow for easy utilization and expansion. We show that NAPS can scale to long timescale experiments at a high frame rate and that it enables the investigation of detailed behavioural variation within individuals in a group. Expanding the toolkit for capturing the constituent behaviours of social groups is essential for understanding the structure and dynamics of social networks. NAPS provides a key tool for capturing these behaviours and can provide critical data for understanding how individual variation influences collective dynamics.

Details

Language :
English
ISSN :
2041210X
Volume :
14
Issue :
10
Database :
Directory of Open Access Journals
Journal :
Methods in Ecology and Evolution
Publication Type :
Academic Journal
Accession number :
edsdoj.87f915876d9447cfb6a678a1d71c8def
Document Type :
article
Full Text :
https://doi.org/10.1111/2041-210X.14201