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Identification and virtual screening of novel salty peptides from hydrolysate of tilapia by-product by batch molecular docking

Authors :
Hongjun Ren
Jingxuan Zhou
Huixian Fu
Qiaohui Feng
Jionghao Wang
Chuan Li
Guanghua Xia
Wenting Shang
Yanfu He
Source :
Frontiers in Nutrition, Vol 10 (2024)
Publication Year :
2024
Publisher :
Frontiers Media S.A., 2024.

Abstract

IntroductionTilapia produces a large number of by-products during processing, which contain potentially flavorful peptides.MethodsThe application of PyRx software enabled batch molecular docking andscreening of 16 potential salty peptides from 189 peptides identified in the enzymaticdigestion of tilapia by-products.ResultsAccording to sensory analysis, all 16 peptides werepredominantly salty with a threshold of 0.256 - 0.379 mmol/L with some sournessand astringency, among which HLDDALR had the highest salty intensity, followedby VIEPLDIGDDKVR, FPGIPDHL, and DFKSPDDPSRH. I addition, moleculardocking results showed these four core peptides with high salt intensity bound to thesalt receptor TRPV1 mainly via van der Waals interactions, hydrogen bonds, andhydrophobic forces; Arg491, Tyr487, VAL441, and Asp708 were the key sites for thebinding of salty peptides to TRPV1. Therefore, the application of batch moleculardocking using PyRx is effective and economical for the virtual screening of saltypeptides.

Details

Language :
English
ISSN :
2296861X
Volume :
10
Database :
Directory of Open Access Journals
Journal :
Frontiers in Nutrition
Publication Type :
Academic Journal
Accession number :
edsdoj.8114e7ca95c3455d896ff4989c8edfc9
Document Type :
article
Full Text :
https://doi.org/10.3389/fnut.2023.1343209