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Crowd sourcing a new paradigm for interactome driven drug target identification in Mycobacterium tuberculosis.

Authors :
Rohit Vashisht
Anupam Kumar Mondal
Akanksha Jain
Anup Shah
Priti Vishnoi
Priyanka Priyadarshini
Kausik Bhattacharyya
Harsha Rohira
Ashwini G Bhat
Anurag Passi
Keya Mukherjee
Kumari Sonal Choudhary
Vikas Kumar
Anshula Arora
Prabhakaran Munusamy
Ahalyaa Subramanian
Aparna Venkatachalam
S Gayathri
Sweety Raj
Vijaya Chitra
Kaveri Verma
Salman Zaheer
J Balaganesh
Malarvizhi Gurusamy
Mohammed Razeeth
Ilamathi Raja
Madhumohan Thandapani
Vishal Mevada
Raviraj Soni
Shruti Rana
Girish Muthagadhalli Ramanna
Swetha Raghavan
Sunil N Subramanya
Trupti Kholia
Rajesh Patel
Varsha Bhavnani
Lakavath Chiranjeevi
Soumi Sengupta
Pankaj Kumar Singh
Naresh Atray
Swati Gandhi
Tiruvayipati Suma Avasthi
Shefin Nisthar
Meenakshi Anurag
Pratibha Sharma
Yasha Hasija
Debasis Dash
Arun Sharma
Vinod Scaria
Zakir Thomas
OSDD Consortium
Nagasuma Chandra
Samir K Brahmachari
Anshu Bhardwaj
Source :
PLoS ONE, Vol 7, Iss 7, p e39808 (2012)
Publication Year :
2012
Publisher :
Public Library of Science (PLoS), 2012.

Abstract

A decade since the availability of Mycobacterium tuberculosis (Mtb) genome sequence, no promising drug has seen the light of the day. This not only indicates the challenges in discovering new drugs but also suggests a gap in our current understanding of Mtb biology. We attempt to bridge this gap by carrying out extensive re-annotation and constructing a systems level protein interaction map of Mtb with an objective of finding novel drug target candidates. Towards this, we synergized crowd sourcing and social networking methods through an initiative 'Connect to Decode' (C2D) to generate the first and largest manually curated interactome of Mtb termed 'interactome pathway' (IPW), encompassing a total of 1434 proteins connected through 2575 functional relationships. Interactions leading to gene regulation, signal transduction, metabolism, structural complex formation have been catalogued. In the process, we have functionally annotated 87% of the Mtb genome in context of gene products. We further combine IPW with STRING based network to report central proteins, which may be assessed as potential drug targets for development of drugs with least possible side effects. The fact that five of the 17 predicted drug targets are already experimentally validated either genetically or biochemically lends credence to our unique approach.

Subjects

Subjects :
Medicine
Science

Details

Language :
English
ISSN :
19326203
Volume :
7
Issue :
7
Database :
Directory of Open Access Journals
Journal :
PLoS ONE
Publication Type :
Academic Journal
Accession number :
edsdoj.7f5e30f92a504d5a9a73abbdd29ca345
Document Type :
article
Full Text :
https://doi.org/10.1371/journal.pone.0039808