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CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis.

Authors :
Mahdi Jalili
Ali Salehzadeh-Yazdi
Yazdan Asgari
Seyed Shahriar Arab
Marjan Yaghmaie
Ardeshir Ghavamzadeh
Kamran Alimoghaddam
Source :
PLoS ONE, Vol 10, Iss 11, p e0143111 (2015)
Publication Year :
2015
Publisher :
Public Library of Science (PLoS), 2015.

Abstract

Various disciplines are trying to solve one of the most noteworthy queries and broadly used concepts in biology, essentiality. Centrality is a primary index and a promising method for identifying essential nodes, particularly in biological networks. The newly created CentiServer is a comprehensive online resource that provides over 110 definitions of different centrality indices, their computational methods, and algorithms in the form of an encyclopedia. In addition, CentiServer allows users to calculate 55 centralities with the help of an interactive web-based application tool and provides a numerical result as a comma separated value (csv) file format or a mapped graphical format as a graph modeling language (GML) file. The standalone version of this application has been developed in the form of an R package. The web-based application (CentiServer) and R package (centiserve) are freely available at http://www.centiserver.org/.

Subjects

Subjects :
Medicine
Science

Details

Language :
English
ISSN :
19326203
Volume :
10
Issue :
11
Database :
Directory of Open Access Journals
Journal :
PLoS ONE
Publication Type :
Academic Journal
Accession number :
edsdoj.7b0a17ac729949fe8346e85455bb8e7a
Document Type :
article
Full Text :
https://doi.org/10.1371/journal.pone.0143111