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Phylogeny and potential virulence of cryptic clade Escherichia coli species complex isolates derived from an arable field trial
- Source :
- Current Research in Microbial Sciences, Vol 3, Iss , Pp 100093- (2022)
- Publication Year :
- 2022
- Publisher :
- Elsevier, 2022.
-
Abstract
- Analysis of Escherichia coli taxonomy has expanded into a species-complex with the identification of divergent cryptic clades. A key question is the evolutionary trajectory of these clades and their relationship to isolates of clinical or veterinary importance. Since they have some environmental association, we screened a collection of E. coli isolated from a long-term spring barley field trial for their presence. While most isolates clustered into the enteric-clade, four of them clustered into Clade-V, and one in Clade-IV. The Clade -V isolates shared >96% intra-clade average nucleotide sequence identity but
Details
- Language :
- English
- ISSN :
- 26665174
- Volume :
- 3
- Issue :
- 100093-
- Database :
- Directory of Open Access Journals
- Journal :
- Current Research in Microbial Sciences
- Publication Type :
- Academic Journal
- Accession number :
- edsdoj.79a83e084894b039a6a51c87065e77d
- Document Type :
- article
- Full Text :
- https://doi.org/10.1016/j.crmicr.2021.100093