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Visualisation of nucleotide sequences

Authors :
Tomas Rekašius
Source :
Lietuvos Matematikos Rinkinys, Vol 46, Iss spec. (2023)
Publication Year :
2023
Publisher :
Vilnius University Press, 2023.

Abstract

The paper reviews the visualisation problems of genetic sequences and of their analysis results as well as other related problems. A possible formulation of the problem based on similarity, complexity measure (distance) between DNA sequences is proposed. It is solved by making use of multidimensional scaling (MDS) of principal component analysis (PCA) methods.

Subjects

Subjects :
DNA sequences
complexity measure
multidimensional scaling
Mathematics
QA1-939

Details

Language :
English, Lithuanian
ISSN :
01322818 and 2335898X
Volume :
46
Issue :
spec.
Database :
Directory of Open Access Journals
Journal :
Lietuvos Matematikos Rinkinys
Publication Type :
Academic Journal
Accession number :
edsdoj.7408039e9f9446c88103c70c6557fdb1
Document Type :
article
Full Text :
https://doi.org/10.15388/LMR.2006.30765
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