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NetMatchStar: an enhanced Cytoscape network querying app [version 1; referees: 2 approved]
- Source :
- F1000Research, Vol 4 (2015)
- Publication Year :
- 2015
- Publisher :
- F1000 Research Ltd, 2015.
-
Abstract
- We present NetMatchStar, a Cytoscape app to find all the occurrences of a query graph in a network and check for its significance as a motif with respect to seven different random models. The query can be uploaded or built from scratch using Cytoscape facilities. The app significantly enhances the previous NetMatch in style, performance and functionality. Notably NetMatchStar allows queries with wildcards.
- Subjects :
- Bioinformatics
Theory & Simulation
Medicine
Science
Subjects
Details
- Language :
- English
- ISSN :
- 20461402
- Volume :
- 4
- Database :
- Directory of Open Access Journals
- Journal :
- F1000Research
- Publication Type :
- Academic Journal
- Accession number :
- edsdoj.68ebbbdc42f741ce8567edf9a381e17a
- Document Type :
- article
- Full Text :
- https://doi.org/10.12688/f1000research.6656.1