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Dynamics of the 4D genome during in vivo lineage specification and differentiation

Authors :
A. Marieke Oudelaar
Robert A. Beagrie
Matthew Gosden
Sara de Ornellas
Emily Georgiades
Jon Kerry
Daniel Hidalgo
Joana Carrelha
Arun Shivalingam
Afaf H. El-Sagheer
Jelena M. Telenius
Tom Brown
Veronica J. Buckle
Merav Socolovsky
Douglas R. Higgs
Jim R. Hughes
Source :
Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)
Publication Year :
2020
Publisher :
Nature Portfolio, 2020.

Abstract

The relationship between regulatory elements, chromatin interactions and gene expression during development remains poorly understood. Here the authors present Tiled-C, a low-input 3C approach to study genome architecture at high resolution, and apply it to mouse erythroid differentiation in vivo, finding that enhancer-promoter interactions are formed gradually during differentiation, concomitant with progressive upregulation of gene activity.

Subjects

Subjects :
Science

Details

Language :
English
ISSN :
20411723
Volume :
11
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Nature Communications
Publication Type :
Academic Journal
Accession number :
edsdoj.68d72c62d2d48089c3be17071099d2e
Document Type :
article
Full Text :
https://doi.org/10.1038/s41467-020-16598-7