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A de novo Genome of a Chinese Radish Cultivar

Authors :
Zhang Xiaohui
Yue Zhen
Mei Shiyong
Qiu Yang
Yang Xinhua
Chen Xiaohua
Cheng Feng
Wu Zhangyan
Sun Yuyan
Jing Yi
Liu Bo
Shen Di
Wang Haiping
Cui Na
Duan Yundan
Wu Jian
Wang Jinglei
Gan Caixia
Wang Jun
Wang Xiaowu
Li Xixiang
Source :
Horticultural Plant Journal, Vol 1, Iss 3, Pp 155-164 (2015)
Publication Year :
2015
Publisher :
KeAi Communications Co., Ltd., 2015.

Abstract

Here, we report a high-quality draft genome of a Chinese radish (Raphanus sativus) cultivar. This draft contains 387.73 Mb of assembled scaffolds, 83.93% of the scaffolds were anchored onto nine pseudochromosomes and 95.09% of 43 240 protein-coding genes were functionally annotated. 184.75 Mb (47.65%) of repeat sequences was identified in the assembled genome. By comparative analyses of the radish genome against 10 other plant genomes, 2 275 genes in 780 gene families were found unique to R. sativus. This genome is a good reference for genomic study and of great value for genetic improvement of radish.

Details

Language :
English
ISSN :
24680141 and 20959885
Volume :
1
Issue :
3
Database :
Directory of Open Access Journals
Journal :
Horticultural Plant Journal
Publication Type :
Academic Journal
Accession number :
edsdoj.5f94d8ebfe84b7ca9cc5e8b1bf0a2b9
Document Type :
article
Full Text :
https://doi.org/10.16420/j.issn.2095-9885.2016-0028