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Establishment of a typing model for diffuse large B-cell lymphoma based on B-cell receptor repertoire sequencing

Authors :
Wenhua Jiang
Hailong Wang
Shiyong Zhou
Guoqing Zhu
Mingyou Gao
Kuo Zhao
Limeng Zhang
Xiaojing Xie
Ning Zhao
Caijuan Tian
Zhenzhen Zhang
Fang Yan
Yi Pan
Pengfei Liu
Source :
BMC Cancer, Vol 21, Iss 1, Pp 1-10 (2021)
Publication Year :
2021
Publisher :
BMC, 2021.

Abstract

Abstract Background The purpose of this study was to construct a new typing model for diffuse large B-cell lymphoma (DLBCL) patients based on the B-cell receptor (BCR) and explore its potential molecular mechanism. Methods BCR repertoire sequencing and whole-exome sequencing were performed on formalin-fixed paraffin-embedded samples from 12 DLBCL patients. Subsequently, a typing model was built with cluster analysis, and prognostic indicators between the two groups were compared to verify the typing model. Then, mutation and bioinformatics analyses were conducted to investigate the potential biomarkers of prognostic differences between the two groups. Results Based on BCR sequencing data, we divided patients into two clusters (cluster 1 and cluster 2); this classification differed from the traditional typing method (GCB and non-GCB), in which cluster 1 included some non-GCB patients. The progression-free survival (PFS), overall survival (OS), metastasis and Shannon diversity index of IGH V-J and survival after chemotherapy were significantly different (P

Details

Language :
English
ISSN :
14712407
Volume :
21
Issue :
1
Database :
Directory of Open Access Journals
Journal :
BMC Cancer
Publication Type :
Academic Journal
Accession number :
edsdoj.5f777d8af2d147b29d64e3c27a8bb183
Document Type :
article
Full Text :
https://doi.org/10.1186/s12885-021-08015-z