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Complete hazard ranking to analyze right-censored data: An ALS survival study.

Authors :
Zhengnan Huang
Hongjiu Zhang
Jonathan Boss
Stephen A Goutman
Bhramar Mukherjee
Ivo D Dinov
Yuanfang Guan
Pooled Resource Open-Access ALS Clinical Trials Consortium
Source :
PLoS Computational Biology, Vol 13, Iss 12, p e1005887 (2017)
Publication Year :
2017
Publisher :
Public Library of Science (PLoS), 2017.

Abstract

Survival analysis represents an important outcome measure in clinical research and clinical trials; further, survival ranking may offer additional advantages in clinical trials. In this study, we developed GuanRank, a non-parametric ranking-based technique to transform patients' survival data into a linear space of hazard ranks. The transformation enables the utilization of machine learning base-learners including Gaussian process regression, Lasso, and random forest on survival data. The method was submitted to the DREAM Amyotrophic Lateral Sclerosis (ALS) Stratification Challenge. Ranked first place, the model gave more accurate ranking predictions on the PRO-ACT ALS dataset in comparison to Cox proportional hazard model. By utilizing right-censored data in its training process, the method demonstrated its state-of-the-art predictive power in ALS survival ranking. Its feature selection identified multiple important factors, some of which conflicts with previous studies.

Subjects

Subjects :
Biology (General)
QH301-705.5

Details

Language :
English
ISSN :
1553734X and 15537358
Volume :
13
Issue :
12
Database :
Directory of Open Access Journals
Journal :
PLoS Computational Biology
Publication Type :
Academic Journal
Accession number :
edsdoj.5623fc72bf14d8d99ef05c47d47c1e8
Document Type :
article
Full Text :
https://doi.org/10.1371/journal.pcbi.1005887