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RefXAS: an open access database of X-ray absorption spectra

Authors :
Sebastian Paripsa
Abhijeet Gaur
Frank Förste
Dmitry E. Doronkin
Wolfgang Malzer
Christopher Schlesiger
Birgit Kanngießer
Edmund Welter
Jan-Dierk Grunwaldt
Dirk Lützenkirchen-Hecht
Source :
Journal of Synchrotron Radiation, Vol 31, Iss 5, Pp 1105-1117 (2024)
Publication Year :
2024
Publisher :
International Union of Crystallography, 2024.

Abstract

Under DAPHNE4NFDI, the X-ray absorption spectroscopy (XAS) reference database, RefXAS, has been set up. For this purpose, we developed a method to enable users to submit a raw dataset, with its associated metadata, via a dedicated website for inclusion in the database. Implementation of the database includes an upload of metadata to the scientific catalogue and an upload of files via object storage, with automated query capabilities through a web server and visualization of the data and files. Based on the mode of measurements, quality criteria have been formulated for the automated check of any uploaded data. In the present work, the significant metadata fields for reusability, as well as reproducibility of results (FAIR data principles), are discussed. Quality criteria for the data uploaded to the database have been formulated and assessed. Moreover, the usability and interoperability of available XAS data/file formats have been explored. The first version of the RefXAS database prototype is presented, which features a human verification procedure, currently being tested with a new user interface designed specifically for curators; a user-friendly landing page; a full list of datasets; advanced search capabilities; a streamlined upload process; and, finally, a server-side automatic authentication and (meta-) data storage via MongoDB, PostgreSQL and (data-) files via relevant APIs.

Details

Language :
English
ISSN :
16005775
Volume :
31
Issue :
5
Database :
Directory of Open Access Journals
Journal :
Journal of Synchrotron Radiation
Publication Type :
Academic Journal
Accession number :
edsdoj.53e0e056c639481d85e777d077c3d293
Document Type :
article
Full Text :
https://doi.org/10.1107/S1600577524006751