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A chromosome-level genome assembly of Sesamia inferens

Authors :
Hongran Li
Yan Peng
Chao Wu
Chess-Kadouste Vigan
Kaikai Mao
Jingyun Zhu
Luming Zou
Minghui Jin
Lei Zhang
Yutao Xiao
Source :
Scientific Data, Vol 11, Iss 1, Pp 1-7 (2024)
Publication Year :
2024
Publisher :
Nature Portfolio, 2024.

Abstract

Abstract The pink stem borer, Sesamia inferens (Walker), is a significant polyphagous pest historically restricted to regions south of N34° latitude. However, with changes in global climate and farming practices, the distribution of this moth has progressively exceeded its traditional limit of 34° N and encompassed most regions in North China. The genetic adaptations of S. inferens remain incompletely understood due to the lack of high-quality genome resources. Here, we sequenced the genome of S. inferens using PacBio and Hi-C technology, yielding a genome assembly of 865.04 Mb with contig N50 of 1.23 Mb. BUSCO analysis demonstrated this genome assembly has a high-level completeness of 96.1% gene coverage. In total, 459.72 Mb repeat sequences (53.14% of the assembled genome) and 20858 protein-coding genes were identified. We used the Hi-C technique to anchor 1135 contigs to 31 chromosomes, yielding a chromosome-level genome assembly with a scaffold N50 of 29.99 Mb. In conclusion, our high-quality genome assembly provided valuable resource that exploring the genetic characteristics of local adaptation and developing an efficient control strategy.

Subjects

Subjects :
Science

Details

Language :
English
ISSN :
20524463
Volume :
11
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Scientific Data
Publication Type :
Academic Journal
Accession number :
edsdoj.53600e51b86470ba441790cef7ba3a9
Document Type :
article
Full Text :
https://doi.org/10.1038/s41597-024-02937-6