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Bioinformatics analysis of immune-related prognostic genes and immunotherapy in renal clear cell carcinoma.

Authors :
Ziwen Pan
Sheng Chang
Song Chen
Daqiang Zhao
Zhiyu Zou
Linrui Dai
Yibo Hou
Qianqian Zhang
Yuanyuan Yang
Zhishui Chen
Weijie Zhang
Yuanyuan Zhao
Source :
PLoS ONE, Vol 17, Iss 11, p e0272542 (2022)
Publication Year :
2022
Publisher :
Public Library of Science (PLoS), 2022.

Abstract

Clear cell renal cell carcinoma (ccRCC) is an immunogenic tumor, and investigating the immunorelated genes is essential. To investigate the immunoprognostic genes of ccRCC, we analyzed the data assimilated from a public database (The Cancer Genome Atlas (TCGA) database and the gene expression omnibus (GEO) database) using bioinformatics. Then, an immunoprognosis model was constructed to identify four hub genes with moderate predictive values for the prognosis of ccRCC patients. These four genes were associated with the prognosis of ccRCC patients based on Oncomine and Gena Expression Profiling Interactive Analysis (GEPIA) databases. The correlation analysis between the immune infiltrate, immune checkpoints, and immunotherapy and this immunoprognosis model showed that immune infiltration could predict the immunotherapy effects. We also conducted a quantitative real-time polymerase chain reaction analysis and found that the expressions of three hub genes were associated with tumor progression (P

Subjects

Subjects :
Medicine
Science

Details

Language :
English
ISSN :
19326203
Volume :
17
Issue :
11
Database :
Directory of Open Access Journals
Journal :
PLoS ONE
Publication Type :
Academic Journal
Accession number :
edsdoj.52481108cf6478587ae43b1b1ea3941
Document Type :
article
Full Text :
https://doi.org/10.1371/journal.pone.0272542