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Computational Drug Screening Identifies Compounds Targeting Renal Age-associated Molecular Profiles

Authors :
Christian Koppelstaetter
Johannes Leierer
Michael Rudnicki
Julia Kerschbaum
Andreas Kronbichler
Anette Melk
Gert Mayer
Paul Perco
Source :
Computational and Structural Biotechnology Journal, Vol 17, Iss , Pp 843-853 (2019)
Publication Year :
2019
Publisher :
Elsevier, 2019.

Abstract

Aging is a major driver for chronic kidney disease (CKD) and the counterbalancing of aging processes holds promise to positively impact disease development and progression.In this study we generated a signature of renal age-associated genes (RAAGs) based on six different data sources including transcriptomics data as well as data extracted from scientific literature and dedicated databases. Protein abundance in renal tissue of the 634 identified RAAGs was studied next to the analysis of affected molecular pathways. RAAG expression profiles were furthermore analysed in a cohort of 63 CKD patients with available follow-up data to determine association with CKD progression. 23 RAAGs were identified showing concordant regulation in renal aging and CKD progression. This set was used as input to computationally screen for compounds with the potential of reversing the RAAG/CKD signature on the transcriptional level. Among the top-ranked drugs we identified atorvastatin, captopril, valsartan, and rosiglitazone, which are widely used in clinical practice for the treatment of patients with renal and cardiovascular diseases. Their positive impact on the RAAG/CKD signature could be validated in an in-vitro model of renal aging.In summary, we have (i) consolidated a set of RAAGs, (ii) determined a subset of RAAGs with concordant regulation in CKD progression, and (iii) identified a set of compounds capable of reversing the proposed RAAG/CKD signature. Keywords: Renal aging, Chronic kidney disease progression, Computational compound screening, Drug repurposing, Anti-aging

Subjects

Subjects :
Biotechnology
TP248.13-248.65

Details

Language :
English
ISSN :
20010370
Volume :
17
Issue :
843-853
Database :
Directory of Open Access Journals
Journal :
Computational and Structural Biotechnology Journal
Publication Type :
Academic Journal
Accession number :
edsdoj.512b70257b294955afdf4bc0cd51bdf5
Document Type :
article
Full Text :
https://doi.org/10.1016/j.csbj.2019.06.019