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Estimating the optimal linear combination of predictors using spherically constrained optimization

Authors :
Priyam Das
Debsurya De
Raju Maiti
Mona Kamal
Katherine A. Hutcheson
Clifton D. Fuller
Bibhas Chakraborty
Christine B. Peterson
Source :
BMC Bioinformatics, Vol 23, Iss S3, Pp 1-20 (2022)
Publication Year :
2022
Publisher :
BMC, 2022.

Abstract

Abstract Background In the context of a binary classification problem, the optimal linear combination of continuous predictors can be estimated by maximizing the area under the receiver operating characteristic curve. For ordinal responses, the optimal predictor combination can similarly be obtained by maximization of the hypervolume under the manifold (HUM). Since the empirical HUM is discontinuous, non-differentiable, and possibly multi-modal, solving this maximization problem requires a global optimization technique. Estimation of the optimal coefficient vector using existing global optimization techniques is computationally expensive, becoming prohibitive as the number of predictors and the number of outcome categories increases. Results We propose an efficient derivative-free black-box optimization technique based on pattern search to solve this problem, which we refer to as Spherically Constrained Optimization Routine (SCOR). Through extensive simulation studies, we demonstrate that the proposed method achieves better performance than existing methods including the step-down algorithm. Finally, we illustrate the proposed method to predict the severity of swallowing difficulty after radiation therapy for oropharyngeal cancer based on radiation dose to various structures in the head and neck. Conclusions Our proposed method addresses an important challenge in combining multiple biomarkers to predict an ordinal outcome. This problem is particularly relevant to medical research, where it may be of interest to diagnose a disease with various stages of progression or a toxicity with multiple grades of severity. We provide the implementation of our proposed SCOR method as an R package, available online at https://CRAN.R-project.org/package=SCOR .

Details

Language :
English
ISSN :
14712105
Volume :
23
Issue :
S3
Database :
Directory of Open Access Journals
Journal :
BMC Bioinformatics
Publication Type :
Academic Journal
Accession number :
edsdoj.43e7ce1b492433bb5a65757b5bc7a08
Document Type :
article
Full Text :
https://doi.org/10.1186/s12859-022-04953-y