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Genome-wide identification of glutamate receptor-like gene family in soybean

Authors :
Xinran Li
Tianhao Zhu
Xuying Wang
Miao Zhu
Source :
Heliyon, Vol 9, Iss 11, Pp e21655- (2023)
Publication Year :
2023
Publisher :
Elsevier, 2023.

Abstract

Glutamate receptor-like genes (GLRs) are essential in the growth and development of plants and many physiological and biochemical processes; however, related information in soybean is lacking. In this study, 105 GLRs, including 67 Glycine soja and 38 Glycine max GLRs, were identified and divided into two clades (Clades II and III) according to their phylogenetic relationships. GLR members in the same branch had a relatively conservative motif composition and genetic structure. Furthermore, the soybean GLR family mainly experienced purification selection during evolution. Cis-acting element analysis, gene ontology, and Kyoto Encyclopedia of Genes and Genomic annotations indicated the complexity of the gene regulation and functional diversity of the soybean GLR. Moreover, transcriptome data analysis showed that these GLRs had different expression profiles in different tissues, and Clade III members had higher and more common expression patterns. Additionally, the expression profiles under jasmonic acid treatment and salt stress indicate that the GLR participated in the jasmonic acid signaling pathway and plays a role in salt treatment. This study provides information for a comprehensive understanding of the soybean GLR family and a reference for further functional research and genetic improvement.

Details

Language :
English
ISSN :
24058440
Volume :
9
Issue :
11
Database :
Directory of Open Access Journals
Journal :
Heliyon
Publication Type :
Academic Journal
Accession number :
edsdoj.3c872beeb4ae47ca8dd2075142225b20
Document Type :
article
Full Text :
https://doi.org/10.1016/j.heliyon.2023.e21655