Back to Search
Start Over
The complete choloroplast genome of Carrierea calycina
- Source :
- Mitochondrial DNA. Part B. Resources, Vol 4, Iss 1, Pp 1061-1062 (2019)
- Publication Year :
- 2019
- Publisher :
- Taylor & Francis Group, 2019.
-
Abstract
- The whole chloroplast (cp) genome sequence of Carrierea calycina has been characterized using Illumina pair-end sequencing. The complete cp genome was 158,085 bp in length, containing a large single copy region (LSC) of 84,663 bp, and a small single copy region (SSC) of 17,570 bp, which were separated by a pair of 27,926 bp inverted repeat regions (IRs). The genome contained 129 genes, including 85 protein-coding genes, 36 tRNA genes, and eight rRNA genes. The overall GC content of C. calycina cp genome is 36.8%, whereas the corresponding values of the LSC, SSC, and IR regions are 34.8%, 30.3%, and 41.8%, respectively. Further, phylogenetic analysis suggested that the location of C. calycina is out of the Idesia polycarpa and it is an outgroup to the genera of Salix and Populus.
- Subjects :
- carrierea calycina
chloroplast genome
phylogenetic analysis
Genetics
QH426-470
Subjects
Details
- Language :
- English
- ISSN :
- 23802359
- Volume :
- 4
- Issue :
- 1
- Database :
- Directory of Open Access Journals
- Journal :
- Mitochondrial DNA. Part B. Resources
- Publication Type :
- Academic Journal
- Accession number :
- edsdoj.3ac5d6adbf87441d982d4393fc3bb13d
- Document Type :
- article
- Full Text :
- https://doi.org/10.1080/23802359.2019.1586466