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Characterising information gains and losses when collecting multiple epidemic model outputs

Authors :
Katharine Sherratt
Ajitesh Srivastava
Kylie Ainslie
David E. Singh
Aymar Cublier
Maria Cristina Marinescu
Jesus Carretero
Alberto Cascajo Garcia
Nicolas Franco
Lander Willem
Steven Abrams
Christel Faes
Philippe Beutels
Niel Hens
Sebastian Müller
Billy Charlton
Ricardo Ewert
Sydney Paltra
Christian Rakow
Jakob Rehmann
Tim Conrad
Christof Schütte
Kai Nagel
Sam Abbott
Rok Grah
Rene Niehus
Bastian Prasse
Frank Sandmann
Sebastian Funk
Source :
Epidemics, Vol 47, Iss , Pp 100765- (2024)
Publication Year :
2024
Publisher :
Elsevier, 2024.

Abstract

Background: Collaborative comparisons and combinations of epidemic models are used as policy-relevant evidence during epidemic outbreaks. In the process of collecting multiple model projections, such collaborations may gain or lose relevant information. Typically, modellers contribute a probabilistic summary at each time-step. We compared this to directly collecting simulated trajectories. We aimed to explore information on key epidemic quantities; ensemble uncertainty; and performance against data, investigating potential to continuously gain information from a single cross-sectional collection of model results. Methods: We compared projections from the European COVID-19 Scenario Modelling Hub. Five teams modelled incidence in Belgium, the Netherlands, and Spain. We compared July 2022 projections by incidence, peaks, and cumulative totals. We created a probabilistic ensemble drawn from all trajectories, and compared to ensembles from a median across each model’s quantiles, or a linear opinion pool. We measured the predictive accuracy of individual trajectories against observations, using this in a weighted ensemble. We repeated this sequentially against increasing weeks of observed data. We evaluated these ensembles to reflect performance with varying observed data. Results: By collecting modelled trajectories, we showed policy-relevant epidemic characteristics. Trajectories contained a right-skewed distribution well represented by an ensemble of trajectories or a linear opinion pool, but not models’ quantile intervals. Ensembles weighted by performance typically retained the range of plausible incidence over time, and in some cases narrowed this by excluding some epidemic shapes. Conclusions: We observed several information gains from collecting modelled trajectories rather than quantile distributions, including potential for continuously updated information from a single model collection. The value of information gains and losses may vary with each collaborative effort’s aims, depending on the needs of projection users. Understanding the differing information potential of methods to collect model projections can support the accuracy, sustainability, and communication of collaborative infectious disease modelling efforts.

Details

Language :
English
ISSN :
17554365
Volume :
47
Issue :
100765-
Database :
Directory of Open Access Journals
Journal :
Epidemics
Publication Type :
Academic Journal
Accession number :
edsdoj.2c6a12ffb7462bb32e28d130682b1f
Document Type :
article
Full Text :
https://doi.org/10.1016/j.epidem.2024.100765