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Resolution of ab initio shapes determined from small-angle scattering

Authors :
Anne T. Tuukkanen
Gerard J. Kleywegt
Dmitri I. Svergun
Source :
IUCrJ, Vol 3, Iss 6, Pp 440-447 (2016)
Publication Year :
2016
Publisher :
International Union of Crystallography, 2016.

Abstract

Spatial resolution is an important characteristic of structural models, and the authors of structures determined by X-ray crystallography or electron cryo-microscopy always provide the resolution upon publication and deposition. Small-angle scattering of X-rays or neutrons (SAS) has recently become a mainstream structural method providing the overall three-dimensional structures of proteins, nucleic acids and complexes in solution. However, no quantitative resolution measure is available for SAS-derived models, which significantly hampers their validation and further use. Here, a method is derived for resolution assessment for ab initio shape reconstruction from scattering data. The inherent variability of the ab initio shapes is utilized and it is demonstrated how their average Fourier shell correlation function is related to the model resolution. The method is validated against simulated data for proteins with known high-resolution structures and its efficiency is demonstrated in applications to experimental data. It is proposed that henceforth the resolution be reported in publications and depositions of ab initio SAS models.

Details

Language :
English
ISSN :
20522525
Volume :
3
Issue :
6
Database :
Directory of Open Access Journals
Journal :
IUCrJ
Publication Type :
Academic Journal
Accession number :
edsdoj.28c935aa5e4a478ba41f22d0021292fe
Document Type :
article
Full Text :
https://doi.org/10.1107/S2052252516016018