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Genome sequencing of captive white tigers from Bangladesh

Authors :
Ashutosh Das
Md Shahadat Hossain Suvo
Mishuk Shaha
Mukta Das Gupta
Source :
BMC Genomic Data, Vol 25, Iss 1, Pp 1-4 (2024)
Publication Year :
2024
Publisher :
BMC, 2024.

Abstract

Abstract Objectives The Bengal tiger Panthera tigris tigris, is an emblematic animal for Bangladesh. Despite being the apex predator in the wild, their number is decreasing due to anthropogenic activities such as hunting, urbanization, expansion of agriculture and deforestation. By contrast, captive tigers are flourishing due to practical conservation efforts. Breeding within the small captive population can produce inbreeding depression and genetic bottlenecks, which may limit the success of conservation efforts. Despite past decades of research, a comprehensive database on genetic variation in the captive and wild Bengal tigers in Bangladesh still needs to be included. Therefore, this research aimed to investigate the White Bengal tiger genome to create a resource for future studies to understand variation underlying important functional traits. Data description Blood samples from Chattogram Zoo were collected for three white Bengal tigers. Genomic DNA for all collected samples were extracted using a commercial DNA extraction kit. Whole genome sequencing was performed using a DNBseq platform. We generated 77 Gb of whole-genome sequencing (WGS) data for three white Bengal tigers (Average 11X coverage/sample). The data we generated will establish a paradigm for tiger research in Bangladesh by providing a genomic resource for future functional studies on the Bengal white tiger.

Details

Language :
English
ISSN :
27306844
Volume :
25
Issue :
1
Database :
Directory of Open Access Journals
Journal :
BMC Genomic Data
Publication Type :
Academic Journal
Accession number :
edsdoj.277d7100a2d240ce890f4bae595ffed0
Document Type :
article
Full Text :
https://doi.org/10.1186/s12863-024-01239-5