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Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.

Authors :
Julie A McMurry
Nick Juty
Niklas Blomberg
Tony Burdett
Tom Conlin
Nathalie Conte
Mélanie Courtot
John Deck
Michel Dumontier
Donal K Fellows
Alejandra Gonzalez-Beltran
Philipp Gormanns
Jeffrey Grethe
Janna Hastings
Jean-Karim Hériché
Henning Hermjakob
Jon C Ison
Rafael C Jimenez
Simon Jupp
John Kunze
Camille Laibe
Nicolas Le Novère
James Malone
Maria Jesus Martin
Johanna R McEntyre
Chris Morris
Juha Muilu
Wolfgang Müller
Philippe Rocca-Serra
Susanna-Assunta Sansone
Murat Sariyar
Jacky L Snoep
Stian Soiland-Reyes
Natalie J Stanford
Neil Swainston
Nicole Washington
Alan R Williams
Sarala M Wimalaratne
Lilly M Winfree
Katherine Wolstencroft
Carole Goble
Christopher J Mungall
Melissa A Haendel
Helen Parkinson
Source :
PLoS Biology, Vol 15, Iss 6, p e2001414 (2017)
Publication Year :
2017
Publisher :
Public Library of Science (PLoS), 2017.

Abstract

In many disciplines, data are highly decentralized across thousands of online databases (repositories, registries, and knowledgebases). Wringing value from such databases depends on the discipline of data science and on the humble bricks and mortar that make integration possible; identifiers are a core component of this integration infrastructure. Drawing on our experience and on work by other groups, we outline 10 lessons we have learned about the identifier qualities and best practices that facilitate large-scale data integration. Specifically, we propose actions that identifier practitioners (database providers) should take in the design, provision and reuse of identifiers. We also outline the important considerations for those referencing identifiers in various circumstances, including by authors and data generators. While the importance and relevance of each lesson will vary by context, there is a need for increased awareness about how to avoid and manage common identifier problems, especially those related to persistence and web-accessibility/resolvability. We focus strongly on web-based identifiers in the life sciences; however, the principles are broadly relevant to other disciplines.

Subjects

Subjects :
Biology (General)
QH301-705.5

Details

Language :
English
ISSN :
15449173 and 15457885
Volume :
15
Issue :
6
Database :
Directory of Open Access Journals
Journal :
PLoS Biology
Publication Type :
Academic Journal
Accession number :
edsdoj.2740a680c7c54ad590ec4fc17b1e468c
Document Type :
article
Full Text :
https://doi.org/10.1371/journal.pbio.2001414