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On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: Chronicles of the MEMENTO challenge

Authors :
Alberto De Luca
Andrada Ianus
Alexander Leemans
Marco Palombo
Noam Shemesh
Hui Zhang
Daniel C. Alexander
Markus Nilsson
Martijn Froeling
Geert-Jan Biessels
Mauro Zucchelli
Matteo Frigo
Enes Albay
Sara Sedlar
Abib Alimi
Samuel Deslauriers-Gauthier
Rachid Deriche
Rutger Fick
Maryam Afzali
Tomasz Pieciak
Fabian Bogusz
Santiago Aja-Fernández
Evren Özarslan
Derek K. Jones
Haoze Chen
Mingwu Jin
Zhijie Zhang
Fengxiang Wang
Vishwesh Nath
Prasanna Parvathaneni
Jan Morez
Jan Sijbers
Ben Jeurissen
Shreyas Fadnavis
Stefan Endres
Ariel Rokem
Eleftherios Garyfallidis
Irina Sanchez
Vesna Prchkovska
Paulo Rodrigues
Bennet A. Landman
Kurt G. Schilling
Source :
NeuroImage, Vol 240, Iss , Pp 118367- (2021)
Publication Year :
2021
Publisher :
Elsevier, 2021.

Abstract

Diffusion MRI (dMRI) has become an invaluable tool to assess the microstructural organization of brain tissue. Depending on the specific acquisition settings, the dMRI signal encodes specific properties of the underlying diffusion process. In the last two decades, several signal representations have been proposed to fit the dMRI signal and decode such properties. Most methods, however, are tested and developed on a limited amount of data, and their applicability to other acquisition schemes remains unknown. With this work, we aimed to shed light on the generalizability of existing dMRI signal representations to different diffusion encoding parameters and brain tissue types. To this end, we organized a community challenge - named MEMENTO, making available the same datasets for fair comparisons across algorithms and techniques. We considered two state-of-the-art diffusion datasets, including single-diffusion-encoding (SDE) spin-echo data from a human brain with over 3820 unique diffusion weightings (the MASSIVE dataset), and double (oscillating) diffusion encoding data (DDE/DODE) of a mouse brain including over 2520 unique data points. A subset of the data sampled in 5 different voxels was openly distributed, and the challenge participants were asked to predict the remaining part of the data. After one year, eight participant teams submitted a total of 80 signal fits. For each submission, we evaluated the mean squared error, the variance of the prediction error and the Bayesian information criteria. The received submissions predicted either multi-shell SDE data (37%) or DODE data (22%), followed by cartesian SDE data (19%) and DDE (18%). Most submissions predicted the signals measured with SDE remarkably well, with the exception of low and very strong diffusion weightings. The prediction of DDE and DODE data seemed more challenging, likely because none of the submissions explicitly accounted for diffusion time and frequency. Next to the choice of the model, decisions on fit procedure and hyperparameters play a major role in the prediction performance, highlighting the importance of optimizing and reporting such choices. This work is a community effort to highlight strength and limitations of the field at representing dMRI acquired with trending encoding schemes, gaining insights into how different models generalize to different tissue types and fiber configurations over a large range of diffusion encodings.

Details

Language :
English
ISSN :
10959572
Volume :
240
Issue :
118367-
Database :
Directory of Open Access Journals
Journal :
NeuroImage
Publication Type :
Academic Journal
Accession number :
edsdoj.167f9fb5f4014e4e905d57c3b59a5b6b
Document Type :
article
Full Text :
https://doi.org/10.1016/j.neuroimage.2021.118367