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Identification and validation of a novel anoikis-related signature for predicting prognosis and immune landscape in ovarian serous cystadenocarcinoma

Authors :
Yu-Ting Zhu
Shuang-Yue Wu
Song Yang
Jie Ying
Lu Tian
Hong-Liang Xu
He-Ping Zhang
Hui Yao
Wei-Yu Zhang
Qin-Qin Jin
Yin-Ting Yang
Xi-Ya Jiang
Nan Zhang
Shun Yao
Shu-Guang Zhou
Guo Chen
Source :
Heliyon, Vol 9, Iss 8, Pp e18708- (2023)
Publication Year :
2023
Publisher :
Elsevier, 2023.

Abstract

Background: Ovarian serous cystadenocarcinoma (OSC) is the most prevalent histological subtype of ovarian cancer (OV) and presents a serious threat to women's health. Anoikis is an essential component of metastasis, and tumor cells can get beyond it to become viable. The impact of anoikis on OSC, however, has only been the topic of a few studies. Methods: The mRNA sequencing and clinical information of OSC came from The Cancer Genome Atlas Target Genotype-Tissue Expression (TCGA TARGET GTEx) dataset. Anoikis-related genes (ARGs) were collected by Harmonizome and GeneCards websites. Centered on these ARGs, we used unsupervised consensus clustering to explore potential tumor typing and filtered hub ARGs to create a model of predictive signature for OSC patients. Furthermore, we presented clinical specialists with a novel nomogram based on ARGs, revealing the underlying clinical relevance of this signature. Finally, we explored the immune microenvironment among various risk groups. Results: We identified 24 ARGs associated with the prognosis of OSC and classified OSC patients into three subtypes, and the subtype with the best prognosis was more enriched in immune-related pathways. Seven ARGs (ARHGEF7, NOTCH4, CASP2, SKP2, PAK4, LCK, CCDC80) were chosen to establish a risk model and a nomogram that can provide practical clinical decision support. Risk scores were found to be an independent and significant prognostic factor in OSC patients. The CIBERSORTx result revealed an inflammatory microenvironment is different for risk groups, and the proportion of immune infiltrates of Macrophages M1 is negatively correlated with risk score (rs = −0.21, P

Details

Language :
English
ISSN :
24058440
Volume :
9
Issue :
8
Database :
Directory of Open Access Journals
Journal :
Heliyon
Publication Type :
Academic Journal
Accession number :
edsdoj.1505e6a5f2a740d88fff309f4bc5d3a0
Document Type :
article
Full Text :
https://doi.org/10.1016/j.heliyon.2023.e18708