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Implementing reactivity in molecular dynamics simulations with harmonic force fields

Authors :
Jordan J. Winetrout
Krishan Kanhaiya
Joshua Kemppainen
Pieter J. in ‘t Veld
Geeta Sachdeva
Ravindra Pandey
Behzad Damirchi
Adri van Duin
Gregory M. Odegard
Hendrik Heinz
Source :
Nature Communications, Vol 15, Iss 1, Pp 1-16 (2024)
Publication Year :
2024
Publisher :
Nature Portfolio, 2024.

Abstract

Abstract The simulation of chemical reactions and mechanical properties including failure from atoms to the micrometer scale remains a longstanding challenge in chemistry and materials science. Bottlenecks include computational feasibility, reliability, and cost. We introduce a method for reactive molecular dynamics simulations using a clean replacement of non-reactive classical harmonic bond potentials with reactive, energy-conserving Morse potentials, called the Reactive INTERFACE Force Field (IFF-R). IFF-R is compatible with force fields for organic and inorganic compounds such as IFF, CHARMM, PCFF, OPLS-AA, and AMBER. Bond dissociation is enabled by three interpretable Morse parameters per bond type and zero energy upon disconnect. Use cases for bond breaking in molecules, failure of polymers, carbon nanostructures, proteins, composite materials, and metals are shown. The simulation of bond forming reactions is included via template-based methods. IFF-R maintains the accuracy of the corresponding non-reactive force fields and is about 30 times faster than prior reactive simulation methods.

Subjects

Subjects :
Science

Details

Language :
English
ISSN :
20411723
Volume :
15
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Nature Communications
Publication Type :
Academic Journal
Accession number :
edsdoj.1382cf12fb32419ca1ed429f6a194f95
Document Type :
article
Full Text :
https://doi.org/10.1038/s41467-024-50793-0