Back to Search Start Over

Towards genomic-Newborn Screening: Technical feasibility of Exome Sequencing starting from dried blood spots

Authors :
Alessia Mauri
Clarissa Berardo
Davide Biganzoli
Andrea Meta
Sara Benedetti
Federica Rey
Letizia Messa
Gian Vincenzo Zuccotti
Stephana Carelli
Luisella Alberti
Cristina Cereda
Source :
Molecular Genetics and Metabolism Reports, Vol 39, Iss , Pp 101074- (2024)
Publication Year :
2024
Publisher :
Elsevier, 2024.

Abstract

Each year thousands of babies are born with rare genetic disorders not identified by current NBS panels, due to programs which are not yet optimal. Next-generation sequencing technologies have the potential to overcome many NBS drawbacks and provide large amounts of molecular data, broadening the number of diseases investigated. Here, we design and set up an NGS-based approach to evaluate the feasibility of NGS from dried blood spot starting from 34 DBSs.After assessing gDNA yield and integrity, libraries were performed using three target enrichment approaches, sequenced on NS500 platform, and analyzed on commercial platform. Specifically, we focus on virtual gene panels related to highly actionable neonatal/pediatric disorders.WES show that amount and quality of DBS-extracted gDNA are suitable for high-throughput sequencing. We obtain 500–1500 ng for each specimen, 1.7–1.8 260/280 wavelength, and DIN of 7 resulting DNA integrity, on par with traditional venous blood collection. A high read depth with 94.3% coverage uniformity is achieved for all samples.Data results on mean coverage are comparable among the different workflows tested and demonstrate that DBS from newborn collected at birth is a suitable material for the developing of gNBS programs.

Details

Language :
English
ISSN :
22144269
Volume :
39
Issue :
101074-
Database :
Directory of Open Access Journals
Journal :
Molecular Genetics and Metabolism Reports
Publication Type :
Academic Journal
Accession number :
edsdoj.131aec9bb5ee4203b3458d7620276936
Document Type :
article
Full Text :
https://doi.org/10.1016/j.ymgmr.2024.101074