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Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Aster tataricus

Authors :
Xiaofeng Shen
Shuai Guo
Yu Yin
Jingjing Zhang
Xianmei Yin
Conglian Liang
Zhangwei Wang
Bingfeng Huang
Yanhong Liu
Shuiming Xiao
Guangwei Zhu
Source :
Molecules, Vol 23, Iss 10, p 2426 (2018)
Publication Year :
2018
Publisher :
MDPI AG, 2018.

Abstract

We sequenced and analyzed the complete chloroplast genome of Aster tataricus (family Asteraceae), a Chinese herb used medicinally to relieve coughs and reduce sputum. The A. tataricus chloroplast genome was 152,992 bp in size, and harbored a pair of inverted repeat regions (IRa and IRb, each 24,850 bp) divided into a large single-copy (LSC, 84,698 bp) and a small single-copy (SSC, 18,250 bp) region. Our annotation revealed that the A. tataricus chloroplast genome contained 115 genes, including 81 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. In addition, 70 simple sequence repeats (SSRs) were detected in the A. tataricus chloroplast genome, including mononucleotides (36), dinucleotides (1), trinucleotides (23), tetranucleotides (1), pentanucleotides (8), and hexanucleotides (1). Comparative chloroplast genome analysis of three Aster species indicated that a higher similarity was preserved in the IR regions than in the LSC and SSC regions, and that the differences in the degree of preservation were slighter between A. tataricus and A. altaicus than between A. tataricus and A. spathulifolius. Phylogenetic analysis revealed that A. tataricus was more closely related to A. altaicus than to A. spathulifolius. Our findings offer valuable information for future research on Aster species identification and selective breeding.

Details

Language :
English
ISSN :
14203049
Volume :
23
Issue :
10
Database :
Directory of Open Access Journals
Journal :
Molecules
Publication Type :
Academic Journal
Accession number :
edsdoj.06817d0c766549f1a99b52e4876b7d37
Document Type :
article
Full Text :
https://doi.org/10.3390/molecules23102426