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Assessment of polygenic architecture and risk prediction based on common variants across fourteen cancers

Authors :
Yan Dora Zhang
Amber N. Hurson
Haoyu Zhang
Parichoy Pal Choudhury
Douglas F. Easton
Roger L. Milne
Jacques Simard
Per Hall
Kyriaki Michailidou
Joe Dennis
Marjanka K. Schmidt
Jenny Chang-Claude
Puya Gharahkhani
David Whiteman
Peter T. Campbell
Michael Hoffmeister
Mark Jenkins
Ulrike Peters
Li Hsu
Stephen B. Gruber
Graham Casey
Stephanie L. Schmit
Tracy A. O’Mara
Amanda B. Spurdle
Deborah J. Thompson
Ian Tomlinson
Immaculata De Vivo
Maria Teresa Landi
Matthew H. Law
Mark M. Iles
Florence Demenais
Rajiv Kumar
Stuart MacGregor
D. Timothy Bishop
Sarah V. Ward
Melissa L. Bondy
Richard Houlston
John K. Wiencke
Beatrice Melin
Jill Barnholtz-Sloan
Ben Kinnersley
Margaret R. Wrensch
Christopher I. Amos
Rayjean J. Hung
Paul Brennan
James McKay
Neil E. Caporaso
Sonja I. Berndt
Brenda M. Birmann
Nicola J. Camp
Peter Kraft
Nathaniel Rothman
Susan L. Slager
Andrew Berchuck
Paul D. P. Pharoah
Thomas A. Sellers
Simon A. Gayther
Celeste L. Pearce
Ellen L. Goode
Joellen M. Schildkraut
Kirsten B. Moysich
Laufey T. Amundadottir
Eric J. Jacobs
Alison P. Klein
Gloria M. Petersen
Harvey A. Risch
Rachel Z. Stolzenberg-Solomon
Brian M. Wolpin
Donghui Li
Rosalind A. Eeles
Christopher A. Haiman
Zsofia Kote-Jarai
Fredrick R. Schumacher
Ali Amin Al Olama
Mark P. Purdue
Ghislaine Scelo
Marlene D. Dalgaard
Mark H. Greene
Tom Grotmol
Peter A. Kanetsky
Katherine A. McGlynn
Katherine L. Nathanson
Clare Turnbull
Fredrik Wiklund
Breast Cancer Association Consortium (BCAC)
Barrett’s and Esophageal Adenocarcinoma Consortium (BEACON)
Colon Cancer Family Registry (CCFR)
Transdisciplinary Studies of Genetic Variation in Colorectal Cancer (CORECT)
Endometrial Cancer Association Consortium (ECAC)
Genetics and Epidemiology of Colorectal Cancer Consortium (GECCO)
Melanoma Genetics Consortium (GenoMEL)
Glioma International Case-Control Study (GICC)
International Lung Cancer Consortium (ILCCO)
Integrative Analysis of Lung Cancer Etiology and Risk (INTEGRAL) Consortium
International Consortium of Investigators Working on Non-Hodgkin’s Lymphoma Epidemiologic Studies (InterLymph)
Ovarian Cancer Association Consortium (OCAC)
Oral Cancer GWAS
Pancreatic Cancer Case-Control Consortium (PanC4)
Pancreatic Cancer Cohort Consortium (PanScan)
Prostate Cancer Association Group to Investigate Cancer Associated Alterations in the Genome (PRACTICAL)
Renal Cancer GWAS
Testicular Cancer Consortium (TECAC)
Stephen J. Chanock
Nilanjan Chatterjee
Montserrat Garcia-Closas
Source :
Nature Communications, Vol 11, Iss 1, Pp 1-13 (2020)
Publication Year :
2020
Publisher :
Nature Portfolio, 2020.

Abstract

In cancer many gene variants may contribute to disease etiology, but the impact of a given gene variant may have varied effect size. Here, the authors analyse summary statistics of genome-wide association studies from fourteen cancers, and show the utility of polygenic risk scores may vary depending on cancer type.

Subjects

Subjects :
Science

Details

Language :
English
ISSN :
20411723
Volume :
11
Issue :
1
Database :
Directory of Open Access Journals
Journal :
Nature Communications
Publication Type :
Academic Journal
Accession number :
edsdoj.043bfd656ef148a0993f50953c04b25f
Document Type :
article
Full Text :
https://doi.org/10.1038/s41467-020-16483-3