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Generative Model for Synthesizing Ionizable Lipids: A Monte Carlo Tree Search Approach

Authors :
Zhao, Jingyi
Ou, Yuxuan
Tripp, Austin
Rasoulianboroujeni, Morteza
Hernández-Lobato, José Miguel
Publication Year :
2024

Abstract

Ionizable lipids are essential in developing lipid nanoparticles (LNPs) for effective messenger RNA (mRNA) delivery. While traditional methods for designing new ionizable lipids are typically time-consuming, deep generative models have emerged as a powerful solution, significantly accelerating the molecular discovery process. However, a practical challenge arises as the molecular structures generated can often be difficult or infeasible to synthesize. This project explores Monte Carlo tree search (MCTS)-based generative models for synthesizable ionizable lipids. Leveraging a synthetically accessible lipid building block dataset and two specialized predictors to guide the search through chemical space, we introduce a policy network guided MCTS generative model capable of producing new ionizable lipids with available synthesis pathways.

Details

Database :
arXiv
Publication Type :
Report
Accession number :
edsarx.2412.00807
Document Type :
Working Paper