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FastCPH: Efficient Survival Analysis for Neural Networks

Authors :
Yang, Xuelin
Abraham, Louis
Kim, Sejin
Smirnov, Petr
Ruan, Feng
Haibe-Kains, Benjamin
Tibshirani, Robert
Publication Year :
2022

Abstract

The Cox proportional hazards model is a canonical method in survival analysis for prediction of the life expectancy of a patient given clinical or genetic covariates -- it is a linear model in its original form. In recent years, several methods have been proposed to generalize the Cox model to neural networks, but none of these are both numerically correct and computationally efficient. We propose FastCPH, a new method that runs in linear time and supports both the standard Breslow and Efron methods for tied events. We also demonstrate the performance of FastCPH combined with LassoNet, a neural network that provides interpretability through feature sparsity, on survival datasets. The final procedure is efficient, selects useful covariates and outperforms existing CoxPH approaches.

Details

Database :
arXiv
Publication Type :
Report
Accession number :
edsarx.2208.09793
Document Type :
Working Paper