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Near-Optimal Computation of Runs over General Alphabet via Non-Crossing LCE Queries

Authors :
Crochemore, Maxime
Iliopoulos, Costas S.
Kociumaka, Tomasz
Kundu, Ritu
Pissis, Solon P.
Radoszewski, Jakub
Rytter, Wojciech
Waleń, Tomasz
Publication Year :
2016

Abstract

Longest common extension queries (LCE queries) and runs are ubiquitous in algorithmic stringology. Linear-time algorithms computing runs and preprocessing for constant-time LCE queries have been known for over a decade. However, these algorithms assume a linearly-sortable integer alphabet. A recent breakthrough paper by Bannai et.\ al.\ (SODA 2015) showed a link between the two notions: all the runs in a string can be computed via a linear number of LCE queries. The first to consider these problems over a general ordered alphabet was Kosolobov (\emph{Inf.\ Process.\ Lett.}, 2016), who presented an $O(n (\log n)^{2/3})$-time algorithm for answering $O(n)$ LCE queries. This result was improved by Gawrychowski et.\ al.\ (accepted to CPM 2016) to $O(n \log \log n)$ time. In this work we note a special \emph{non-crossing} property of LCE queries asked in the runs computation. We show that any $n$ such non-crossing queries can be answered on-line in $O(n \alpha(n))$ time, which yields an $O(n \alpha(n))$-time algorithm for computing runs.

Details

Database :
arXiv
Publication Type :
Report
Accession number :
edsarx.1606.08275
Document Type :
Working Paper