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The treeness of the tree of historical trees of life
- Source :
- PLoS ONE, PLoS ONE, Public Library of Science, 2020, 15 (1), pp.e0226567. ⟨10.1371/journal.pone.0226567⟩, PLoS ONE, Vol 15, Iss 1, p e0226567 (2020)
- Publication Year :
- 2020
- Publisher :
- HAL CCSD, 2020.
-
Abstract
- This paper compares and categorizes historical ideas about trees showing relationships among biological entities. The hierarchical structure of a tree is used to test the global consistency of similarities among these ideas; in other words we assess the "treeness" of the tree of historical trees. The collected data are figures and ideas about trees showing relationships among biological entities published or drawn by naturalists from 1555 to 2012. They are coded into a matrix of 235 historical trees and 141 descriptive attributes. From the most parsimonious "tree" of historical trees, treeness is measured by consistency index, retention index and homoplasy excess ratio. This tree is used to create sets or categories of trees, or to study the circulation of ideas. From an unrooted network of historical trees, treeness is measured by the delta-score. This unrooted network is used to measure and visualize treeness. The two approaches show a rather good treeness of the data, with respectively a retention idex of 0.83 and homoplasy excess ratio of 0.74, on one hand, and a delta-score of 0.26 on the other hand. It is interpreted as due to vertical transmission, i.e. an inheritance of shared ideas about biological trees among authors. This tree of trees is then used to test categories previously made. For instance, cladists and gradists are « paraphyletic ». The branches of this tree of trees suggest new categories of tree-thinkers that could have been overlooked by historians or systematists.
- Subjects :
- Computer and Information Sciences
Leaves
Evolutionary Processes
Science
[SHS.ANTHRO-BIO]Humanities and Social Sciences/Biological anthropology
Phenetic Evolution
Plant Science
Animal Phylogenetics
Human Evolution
Computer Graphics
Animals
Evolutionary Systematics
Phylogeny
ComputingMilieux_MISCELLANEOUS
Taxonomy
Data Management
Phenetics
Evolutionary Biology
Plant Anatomy
Organisms
Biology and Life Sciences
Eukaryota
Paleontology
Phylogenetic Analysis
Biological Evolution
Organismal Evolution
Phylogenetics
Hominid Evolution
[SDV.GEN.GH]Life Sciences [q-bio]/Genetics/Human genetics
Vertebrates
Earth Sciences
Medicine
Hominin Evolution
Paleogenetics
Zoology
Research Article
Subjects
Details
- Language :
- English
- ISSN :
- 19326203
- Database :
- OpenAIRE
- Journal :
- PLoS ONE, PLoS ONE, Public Library of Science, 2020, 15 (1), pp.e0226567. ⟨10.1371/journal.pone.0226567⟩, PLoS ONE, Vol 15, Iss 1, p e0226567 (2020)
- Accession number :
- edsair.pmid.dedup....20008d1b2b933bf90463dead705e1126