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Epimutations in both the TESK2 and MMACHC promoters in the Epi-cblC inherited disorder of intracellular metabolism of vitamin B

Authors :
Abderrahim, Oussalah
Youssef, Siblini
Sébastien, Hergalant
Céline, Chéry
Pierre, Rouyer
Catia, Cavicchi
Renzo, Guerrini
Pierre-Emmanuel, Morange
David, Trégouët
Mihaela, Pupavac
David, Watkins
Tomi, Pastinen
Wendy K, Chung
Can, Ficicioglu
François, Feillet
D Sean, Froese
Matthias R, Baumgartner
Jean-François, Benoist
Jacek, Majewski
Amelia, Morrone
David S, Rosenblatt
Jean-Louis, Guéant
Source :
Clinical epigenetics. 14(1)
Publication Year :
2021

Abstract

epi-cblC is a recently discovered inherited disorder of intracellular vitamin BWe unraveled the methylome architecture of the CCDC163P-MMACHC CpG island (CpG:33) and the TESK2 CpG island (CpG:51) of 17 epi-cblC cases. We performed an integrative analysis of the DNA methylome profiling, transcriptome reconstruction of RNA-sequencing (RNA-seq), chromatin immunoprecipitation sequencing (ChIP-Seq) of histone H3, and transcription expression of MMACHC and TESK2.The PRDX1 splice mutations and activation of numerous cryptic splice sites produced antisense readthrough transcripts encompassing the bidirectional MMACHC/CCDC163P promoter and the TESK2 promoter, resulting in the silencing of both the MMACHC and TESK2 genes through the deposition of SETD2-dependent H3K36me3 marks and the generation of epimutations in the CpG islands of the two promoters.The antisense readthrough transcription of the mutated PRDX1 produces an epigenetic silencing of MMACHC and TESK2. We propose using the term 'epi-digenism' to define this epigenetic disorder that affects two genes. Epi-cblC is an entity that differs from cblC. Indeed, the PRDX1 and TESK2 altered expressions are observed in epi-cblC but not in cblC, suggesting further evaluating the potential consequences on cancer risk and spermatogenesis.

Details

ISSN :
18687083
Volume :
14
Issue :
1
Database :
OpenAIRE
Journal :
Clinical epigenetics
Accession number :
edsair.pmid..........c2738e1b61e57b15c58349f40cc9824d