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[Construction of a methylation filtration library in Hevea brasiliensis.]
- Source :
- Yi chuan = Hereditas. 32(10)
- Publication Year :
- 2010
-
Abstract
- In order to enrich gene encoding region of Hevea brasiliensis, a methylation filtration library was constructed using Escherichia coli McrBC restriction-modification system. The titers of the non-amplified library and the amplified library were 2.6×106 pfu/ml and 9.0×109, respectively. The rate of positive clones was 86.4%. The lengths of inserted DNA sequence ranged from 1 kb to 2.5 kb and the average size of inserts was 1.2 kb. One hundred clones were selected randomly for sequencing, resulting in splicing out of 81 non-redundant sequences, including 6 contigs and 75 singlets. The redundancy was 17.35%. Blast analysis showed that 39.5% of non-redundant sequences were homologous with the Nr database, 14.81% with the EST database, and 32.1% were unknown sequences. Some sequences were related genes for flowering, insect and disease resistance. Therefore, the rubber tree methylation library is helpful for discovery and cloning of functional genes.
- Subjects :
- Hevea
Sequence Analysis, DNA
DNA Methylation
Polymerase Chain Reaction
Gene Library
Subjects
Details
- ISSN :
- 02539772
- Volume :
- 32
- Issue :
- 10
- Database :
- OpenAIRE
- Journal :
- Yi chuan = Hereditas
- Accession number :
- edsair.pmid..........7ebcda0f34b56815137798b3bd8de8ba