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[Construction of a methylation filtration library in Hevea brasiliensis.]

Authors :
Guan-Qing, Huang
Yu-Wei, Hua
Zhan, Gao
Hua-Sun, Huang
Source :
Yi chuan = Hereditas. 32(10)
Publication Year :
2010

Abstract

In order to enrich gene encoding region of Hevea brasiliensis, a methylation filtration library was constructed using Escherichia coli McrBC restriction-modification system. The titers of the non-amplified library and the amplified library were 2.6×106 pfu/ml and 9.0×109, respectively. The rate of positive clones was 86.4%. The lengths of inserted DNA sequence ranged from 1 kb to 2.5 kb and the average size of inserts was 1.2 kb. One hundred clones were selected randomly for sequencing, resulting in splicing out of 81 non-redundant sequences, including 6 contigs and 75 singlets. The redundancy was 17.35%. Blast analysis showed that 39.5% of non-redundant sequences were homologous with the Nr database, 14.81% with the EST database, and 32.1% were unknown sequences. Some sequences were related genes for flowering, insect and disease resistance. Therefore, the rubber tree methylation library is helpful for discovery and cloning of functional genes.

Details

ISSN :
02539772
Volume :
32
Issue :
10
Database :
OpenAIRE
Journal :
Yi chuan = Hereditas
Accession number :
edsair.pmid..........7ebcda0f34b56815137798b3bd8de8ba