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Identification of genes required for eye development by high-throughput screening of mouse knockouts

Authors :
Bret A. Moore1
Brian C. Leonard2
Lionel Sebbag1
Sydney G. Edwards1
Ann Cooper1
Denise M. Imai3
4
Luis Santos4
Christopher Reilly3
Stephen M. Griffey3
Lynette Bower5
David Clary5
6
Michel J. Roux 7
8
9
Hamid Meziane7
Ewan Straiton Jeremy Mason Yann Herault Ann M. Flenniken12
Lauryl M.J. Nutter12
Zorana Berberovic12
Celeste Owen12
Susan Newbigging12
Hibret Adissu12
Mohammed Eskandarian12
Chih-Wei Hsu15
Sowmya Kalaga15
Uchechukwu Udensi15
Chinwe Asomugha15
Ritu Bohat16
Juan J. Gallegos16
John R. Seavitt16
Jason D. Heaney16
Arthur L. Beaudet16
Mary E. Dickinson15
Monica J. Justice12
Vivek Philip17
Vivek Kumar 17
Karen L. Svenson17
Robert E. Braun17
Sara Wells4
Heather Cater4
Michelle Stewart4
Sharon Clementson-Mobbs4
Russell Joynson4
Xiang Gao18
Tomohiro Suzuki19
Shigeharu Wakana 19
Damian Smedley20
J. K Seong21
Glauco Tocchini-Valentini22
Mark Moore23
Colin Fletcher24
Natasha Karp25
Ramiro Ramirez-Solis25
Jacqueline K. White17
Martin Hrabe de Angelis 26
Wolfgang Wurst26
Sara M. Thomasy2
Paul Flicek 6
Helen Parkinson6
Steve D.M. Brown4
Terrence F. Meehan6
Patsy M. Nishina17
Stephen A. Murray17
Mark P. Krebs17
Ann-Marie Mallon4
K.C.Kent Lloyd 5
Christopher J. Murphy2
Ala Moshiri27
Institut de génétique et biologie moléculaire et cellulaire (IGBMC)
Université Louis Pasteur - Strasbourg I-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC)
Université de Strasbourg (UNISTRA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Department of Molecular and Human Genetics
Baylor College of Medicine (BCM)
Baylor University-Baylor University
Medical Research Council Harwell (Mammalian Genetics Unit and Mary Lyon Centre)
Medical Research Counc
Department of Surgery, Second Hospital of HeBei Medical University
European Bioinformatics Institute [Hinxton] (EMBL-EBI)
EMBL Heidelberg
Cell Biology and Neurobiology Institute
Consiglio Nazionale delle Ricerche [Roma] (CNR)
The Wellcome Trust Sanger Institute [Cambridge]
GSF research center
Institute of Experimental Genetis
Biochemistry
European Bioinformatics Institute
Source :
Communications Biology, Communications Biology, Nature Publishing Group, 2018, 1 (1), ⟨10.1038/s42003-018-0226-0⟩, Communications biology, vol 1, iss 1, Communications biology 1 (2018): 1–12. doi:10.1038/s42003-018-0226-0, info:cnr-pdr/source/autori:Bret A. Moore1, Brian C. Leonard2, Lionel Sebbag1, Sydney G. Edwards1, Ann Cooper1, Denise M. Imai3, 4, Luis Santos4, Christopher Reilly3, Stephen M. Griffey3, Lynette Bower5, David Clary5, 6, Michel J. Roux 7,8,9,10,11, Hamid Meziane7,8,9,10,11, Ewan Straiton Jeremy Mason Yann Herault Ann M. Flenniken12,14, Lauryl M.J. Nutter12,13, Zorana Berberovic12,14, Celeste Owen12,14, Susan Newbigging12,14, Hibret Adissu12,14, Mohammed Eskandarian12,14, Chih-Wei Hsu15, Sowmya Kalaga15, Uchechukwu Udensi15, Chinwe Asomugha15, Ritu Bohat16, Juan J. Gallegos16, John R. Seavitt16, Jason D. Heaney16, Arthur L. Beaudet16, Mary E. Dickinson15,16, Monica J. Justice12,13,16, Vivek Philip17, Vivek Kumar 17, Karen L. Svenson17, Robert E. Braun17, Sara Wells4, Heather Cater4, Michelle Stewart4, Sharon Clementson-Mobbs4, Russell Joynson4, Xiang Gao18, Tomohiro Suzuki19, Shigeharu Wakana 19, Damian Smedley20, J. K Seong21, Glauco Tocchini-Valentini22, Mark Moore23, Colin Fletcher24, Natasha Karp25, Ramiro Ramirez-Solis25, Jacqueline K. White17,25, Martin Hrabe de Angelis 26, Wolfgang Wurst26, Sara M. Thomasy2,27, Paul Flicek 6, Helen Parkinson6, Steve D.M. Brown4, Terrence F. Meehan6, Patsy M. Nishina17, Stephen A. Murray17, Mark P. Krebs17, Ann-Marie Mallon4, K.C.Kent Lloyd 5, Christopher J. Murphy2,27 & Ala Moshiri27/titolo:Identification of genes required for eye development by high-throughput screening of mouse knockouts/doi:10.1038%2Fs42003-018-0226-0/rivista:Communications biology/anno:2018/pagina_da:1/pagina_a:12/intervallo_pagine:1–12/volume:1, Comm. Biol. 1:236 (2018), Communications Biology, Vol 1, Iss 1, Pp 1-12 (2018)
Publication Year :
2018
Publisher :
HAL CCSD, 2018.

Abstract

Despite advances in next generation sequencing technologies, determining the genetic basis of ocular disease remains a major challenge due to the limited access and prohibitive cost of human forward genetics. Thus, less than 4,000 genes currently have available phenotype information for any organ system. Here we report the ophthalmic findings from the International Mouse Phenotyping Consortium, a large-scale functional genetic screen with the goal of generating and phenotyping a null mutant for every mouse gene. Of 4364 genes evaluated, 347 were identified to influence ocular phenotypes, 75% of which are entirely novel in ocular pathology. This discovery greatly increases the current number of genes known to contribute to ophthalmic disease, and it is likely that many of the genes will subsequently prove to be important in human ocular development and disease.<br />Bret Moore et al. from the International Mouse Phenotyping Consortium report the identification of 347 mouse genes that influence ocular phenotypes when knocked out. 75% of the identified genes have not previously been associated with any ocular pathology.

Details

Language :
English
ISSN :
23993642
Database :
OpenAIRE
Journal :
Communications Biology, Communications Biology, Nature Publishing Group, 2018, 1 (1), ⟨10.1038/s42003-018-0226-0⟩, Communications biology, vol 1, iss 1, Communications biology 1 (2018): 1–12. doi:10.1038/s42003-018-0226-0, info:cnr-pdr/source/autori:Bret A. Moore1, Brian C. Leonard2, Lionel Sebbag1, Sydney G. Edwards1, Ann Cooper1, Denise M. Imai3, 4, Luis Santos4, Christopher Reilly3, Stephen M. Griffey3, Lynette Bower5, David Clary5, 6, Michel J. Roux 7,8,9,10,11, Hamid Meziane7,8,9,10,11, Ewan Straiton Jeremy Mason Yann Herault Ann M. Flenniken12,14, Lauryl M.J. Nutter12,13, Zorana Berberovic12,14, Celeste Owen12,14, Susan Newbigging12,14, Hibret Adissu12,14, Mohammed Eskandarian12,14, Chih-Wei Hsu15, Sowmya Kalaga15, Uchechukwu Udensi15, Chinwe Asomugha15, Ritu Bohat16, Juan J. Gallegos16, John R. Seavitt16, Jason D. Heaney16, Arthur L. Beaudet16, Mary E. Dickinson15,16, Monica J. Justice12,13,16, Vivek Philip17, Vivek Kumar 17, Karen L. Svenson17, Robert E. Braun17, Sara Wells4, Heather Cater4, Michelle Stewart4, Sharon Clementson-Mobbs4, Russell Joynson4, Xiang Gao18, Tomohiro Suzuki19, Shigeharu Wakana 19, Damian Smedley20, J. K Seong21, Glauco Tocchini-Valentini22, Mark Moore23, Colin Fletcher24, Natasha Karp25, Ramiro Ramirez-Solis25, Jacqueline K. White17,25, Martin Hrabe de Angelis 26, Wolfgang Wurst26, Sara M. Thomasy2,27, Paul Flicek 6, Helen Parkinson6, Steve D.M. Brown4, Terrence F. Meehan6, Patsy M. Nishina17, Stephen A. Murray17, Mark P. Krebs17, Ann-Marie Mallon4, K.C.Kent Lloyd 5, Christopher J. Murphy2,27 & Ala Moshiri27/titolo:Identification of genes required for eye development by high-throughput screening of mouse knockouts/doi:10.1038%2Fs42003-018-0226-0/rivista:Communications biology/anno:2018/pagina_da:1/pagina_a:12/intervallo_pagine:1–12/volume:1, Comm. Biol. 1:236 (2018), Communications Biology, Vol 1, Iss 1, Pp 1-12 (2018)
Accession number :
edsair.doi.dedup.....fe1e98f792c38115b48232c9948e5e2e
Full Text :
https://doi.org/10.1038/s42003-018-0226-0⟩